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Pull requests: samtools/htsjdk

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Pull requests list

Carrot setup
#1721 opened Oct 8, 2024 by lbergelson Draft
Support reference bundles.
#1713 opened Aug 6, 2024 by cmnbroad Loading…
Update for to use Java 21
#1698 opened Dec 18, 2023 by lbergelson Draft
VCF_CSI_index_implementation
#1684 opened Sep 19, 2023 by gokalpcelik Loading…
5 tasks
proposal for a package htsjdk.tribble.gtf
#1662 opened Mar 16, 2023 by lindenb Loading…
5 tasks done
Refactoring VariantContextComparator
#1629 opened Oct 28, 2022 by lbergelson Loading…
Change queryname sort to match samtools
#1601 opened Mar 30, 2022 by nh13 Loading…
VCF 4.3 writing. vcf VCFHeader Refactor Issues fixed by the header/line refactoring branch
#1596 opened Mar 1, 2022 by cmnbroad Draft
VCFHeader and VCFHeaderLine rewrite/refactoring vcf VCFHeader Refactor Issues fixed by the header/line refactoring branch
#1581 opened Nov 9, 2021 by cmnbroad Loading…
handle utf-8 encoding
#1569 opened Sep 27, 2021 by yash-puligundla Draft
new class: VCFReaderFactory a factory for VCFReader
#1551 opened Apr 23, 2021 by lindenb Loading…
4 of 5 tasks
WIP BCF 2.2 vcf VCFHeader Refactor Issues fixed by the header/line refactoring branch
#1550 opened Apr 22, 2021 by andersleung Draft
5 tasks
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