Adapt documentation and tests for github environment

.github/workflows/CI.yaml

@@ -0,0 +1,37 @@
+name: CI
+on:
+  push:
+    branches:
+      - master
+    tags: '*'
+  pull_request:
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.6'
+          - '1'
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v1
+      - name: Install OpenFASTWrappers
+        run: julia --project=./ -e 'using Pkg; Pkg.add([PackageSpec(url="https://github.com/byuflowlab/Composites.jl.git"),PackageSpec(url="https://github.com/sandialabs/OWENSPreComp.jl.git"),PackageSpec(url="https://github.com/sandialabs/OWENSOpenFASTWrappers.jl.git"),PackageSpec(url="https://github.com/sandialabs/OWENSAero.jl.git"),PackageSpec(url="https://github.com/sandialabs/OWENSFEA.jl.git")])'
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1

.github/workflows/CompatHelper.yml

@@ -0,0 +1,16 @@
+name: CompatHelper
+on:
+  schedule:
+    - cron: '00 00 * * *'
+  workflow_dispatch:
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/Documentation.yml

@@ -0,0 +1,28 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+      - master
+    tags: '*'
+  pull_request:
+
+jobs:
+  build:
+    permissions:
+      contents: write
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: '1'
+      - name: Install dependencies
+        env:
+          PYTHON: ""
+        run: julia --project=docs/ -e 'using Pkg; Pkg.add(PackageSpec(url="https://github.com/byuflowlab/Composites.jl.git"));Pkg.add(PackageSpec(url="https://github.com/sandialabs/OWENSPreComp.jl.git"));Pkg.add(PackageSpec(url="https://github.com/sandialabs/OWENSOpenFASTWrappers.jl.git"));Pkg.add(PackageSpec(url="https://github.com/sandialabs/OWENSAero.jl.git")); Pkg.add(PackageSpec(url="https://github.com/sandialabs/OWENSFEA.jl.git")); Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+      - name: Build and deploy
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # If authenticating with GitHub Actions token
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} # If authenticating with SSH deploy key
+        run: julia --project=docs/ docs/make.jl

.github/workflows/TagBot.yml

@@ -0,0 +1,15 @@
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

README.md

@@ -1,25 +1,17 @@
 # OWENS (Onshore/Offshore Wind/Water ENergy Simulator)
 
+[![](https://img.shields.io/badge/docs-stable-blue.svg)](https://sandialabs.github.io/OWENS.jl)
+![](https://github.com/sandialabs/OWENS.jl/workflows/CI/badge.svg)
+
 This repository is based on the original structural dynamics solver by Brian Owens (see dissertation: http://hdl.handle.net/1969.1/151813).
 The original code has been translated to Julia and revised for simplicity and performance while maintaining accuracy.  GXBeam.jl has also been coupled for geometrically exact beam solutions
 The aerodynamics are provided by the OWENSAero.jl module (https://gitlab.sandia.gov/8821-vawt-tools/OWENSAero.jl) in addition to a coupling to the OpenFAST AeroDyn module. All codes that can be standalone (like the aerodynamics and structures) should be separate and handled through the dependency manager, other functions specific to the OWENS ontology should remain in this repository.
 
-## Documentation
-Until public hosting of the documentation is set up, a readthedocs style webpage can be built via:
-
-    cd path2OWENS.jl/OWENS.jl/docs
-    julia --project make.jl
-
-and then a local server can be started via
-
-    cd ..
-    julia -e 'using LiveServer; serve(dir="docs/build")'
-
-then open your favorite browser and open the following (or what is indicated in the terminal output if different)
-
-    http://localhost:8000/
+## Examples
+Please see the documentation under examples.
 
-Note that you may need to install julia packages as directed in the terminal output if you are building the docs for the first time.
+## Installation 
+Please see the documentation under setup. 
 
 ## Contributing
 Please make all feature changes and bug fixes as branches and then create pull requests against the dev branch.  The dev branch will be periodically pulled into master for significant version changes.

docs/Project.toml

@@ -0,0 +1,9 @@
+[deps]
+BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+Literate = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
+ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
+Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
+
+[extras]
+CPUSummary = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9"

docs/make.jl

@@ -25,6 +25,10 @@ makedocs(;
     remotes = nothing
 )
 
+deploydocs(
+    repo = "github.com/sandialabs/OWENS.jl.git",
+)
+
 # ## Documentation
 # Until public hosting of the documentation is set up, a readthedocs style webpage can be built via:
 

docs/src/literate/A_simplyRunningOWENS.jl

@@ -21,8 +21,8 @@
 
 import OWENS
 
-runpath = "./"  #splitdir(@__FILE__)[1]
+runpath = "/home/runner/work/OWENS.jl/OWENS.jl/docs/src/literate" #splitdir(@__FILE__)[1]
 
-Inp = OWENS.MasterInput("./sampleOWENS.yml")
+Inp = OWENS.MasterInput("/home/runner/work/OWENS.jl/OWENS.jl/docs/src/literate/sampleOWENS.yml")
 
 OWENS.runOWENS(Inp,runpath)

docs/src/literate/B_detailedInputs.jl

@@ -18,9 +18,9 @@ import OWENS
 import OWENSAero
 # import PyPlot
 
-path = runpath = "./" #splitdir(@__FILE__)[1]
+path = runpath = "/home/runner/work/OWENS.jl/OWENS.jl/docs/src/literate" #splitdir(@__FILE__)[1]
 
-Inp = OWENS.MasterInput("./sampleOWENS.yml")
+Inp = OWENS.MasterInput("$runpath/sampleOWENS.yml")
 
 nothing
 
@@ -45,21 +45,28 @@ nbelem = Inp.nbelem
 ncelem = Inp.ncelem
 nselem = Inp.nselem
 ifw = Inp.ifw
+WindType = Inp.WindType
 AModel = Inp.AModel
-windINPfilename = Inp.windINPfilename
+windINPfilename = "$(path)$(Inp.windINPfilename)"
 ifw_libfile = Inp.ifw_libfile
+if ifw_libfile == "nothing"
+    ifw_libfile = nothing
+end
 Blade_Height = Inp.Blade_Height
 Blade_Radius = Inp.Blade_Radius
 numTS = Inp.numTS
 delta_t = Inp.delta_t
-NuMad_geom_xlscsv_file_twr = Inp.NuMad_geom_xlscsv_file_twr
-NuMad_mat_xlscsv_file_twr = Inp.NuMad_mat_xlscsv_file_twr
-NuMad_geom_xlscsv_file_bld = Inp.NuMad_geom_xlscsv_file_bld
-NuMad_mat_xlscsv_file_bld = Inp.NuMad_mat_xlscsv_file_bld
-NuMad_geom_xlscsv_file_strut = Inp.NuMad_geom_xlscsv_file_strut
-NuMad_mat_xlscsv_file_strut = Inp.NuMad_mat_xlscsv_file_strut
+NuMad_geom_xlscsv_file_twr = "$(path)$(Inp.NuMad_geom_xlscsv_file_twr)"
+NuMad_mat_xlscsv_file_twr = "$(path)$(Inp.NuMad_mat_xlscsv_file_twr)"
+NuMad_geom_xlscsv_file_bld = "$(path)$(Inp.NuMad_geom_xlscsv_file_bld)"
+NuMad_mat_xlscsv_file_bld = "$(path)$(Inp.NuMad_mat_xlscsv_file_bld)"
+NuMad_geom_xlscsv_file_strut = "$(path)$(Inp.NuMad_geom_xlscsv_file_strut)"
+NuMad_mat_xlscsv_file_strut = "$(path)$(Inp.NuMad_mat_xlscsv_file_strut)"
 adi_lib = Inp.adi_lib
-adi_rootname = Inp.adi_rootname
+if adi_lib == "nothing"
+    adi_lib = nothing
+end
+adi_rootname = "$(path)$(Inp.adi_rootname)"
 
 B = Nbld
 R = Blade_Radius#177.2022*0.3048 #m
@@ -77,7 +84,7 @@ mymesh,myel,myort,myjoint,sectionPropsArray,mass_twr, mass_bld,
 stiff_twr, stiff_bld,bld_precompinput,
 bld_precompoutput,plyprops_bld,numadIn_bld,lam_U_bld,lam_L_bld,
 twr_precompinput,twr_precompoutput,plyprops_twr,numadIn_twr,lam_U_twr,lam_L_twr,aeroForces,deformAero,
-mass_breakout_blds,mass_breakout_twr,system,assembly,sections = OWENS.setupOWENS(OWENSAero,path;
+mass_breakout_blds,mass_breakout_twr,system,assembly,sections,AD15bldNdIdxRng, AD15bldElIdxRng = OWENS.setupOWENS(OWENSAero,path;
     rho,
     Nslices,
     ntheta,
@@ -90,6 +97,7 @@ mass_breakout_blds,mass_breakout_twr,system,assembly,sections = OWENS.setupOWENS
     shapeY,
     shapeX,
     ifw,
+    WindType,
     delta_t,
     numTS,
     adi_lib,
@@ -191,8 +199,7 @@ nlOn = true,
 numNodes = mymesh.numNodes,
 RayleighAlpha = 0.05,
 RayleighBeta = 0.05,
-iterationType = "DI",
-predef = "update")
+iterationType = "DI")
 
 nothing
 
@@ -225,25 +232,15 @@ nothing
 
 massOwens,stress_U,SF_ult_U,SF_buck_U,stress_L,SF_ult_L,SF_buck_L,stress_TU,SF_ult_TU,
 SF_buck_TU,stress_TL,SF_ult_TL,SF_buck_TL,topstrainout_blade_U,topstrainout_blade_L,
-topstrainout_tower_U,topstrainout_tower_L = OWENS.extractSF(bld_precompinput,
+topstrainout_tower_U,topstrainout_tower_LtopDamage_blade_U,
+topDamage_blade_L,topDamage_tower_U,topDamage_tower_L = OWENS.extractSF(bld_precompinput,
 bld_precompoutput,plyprops_bld,numadIn_bld,lam_U_bld,lam_L_bld,
 twr_precompinput,twr_precompoutput,plyprops_twr,numadIn_twr,lam_U_twr,lam_L_twr,
 mymesh,myel,myort,Nbld,epsilon_x_hist,kappa_y_hist,kappa_z_hist,epsilon_z_hist,
 kappa_x_hist,epsilon_y_hist;verbosity, #Verbosity 0:no printing, 1: summary, 2: summary and spanwise worst safety factor # epsilon_x_hist_1,kappa_y_hist_1,kappa_z_hist_1,epsilon_z_hist_1,kappa_x_hist_1,epsilon_y_hist_1,
 LE_U_idx=1,TE_U_idx=6,SparCapU_idx=3,ForePanelU_idx=2,AftPanelU_idx=5,
 LE_L_idx=1,TE_L_idx=6,SparCapL_idx=3,ForePanelL_idx=2,AftPanelL_idx=5,
-Twr_LE_U_idx=1,Twr_LE_L_idx=1) #TODO: add in ability to have material safety factors and load safety factors
-
-nothing
-
-# The following sections are in work: TODO
+Twr_LE_U_idx=1,Twr_LE_L_idx=1,
+AD15bldNdIdxRng,AD15bldElIdxRng,strut_precompoutput=nothing) #TODO: add in ability to have material safety factors and load safety factors
 
-##########################################
-#### Fatigue #####
-##########################################
-
-##### DEL
-
-##########################################
-#### Data Dump in OpenFAST Format #####
-##########################################
+nothing