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@trstickland
trstickland committed Oct 2, 2018
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Expand Up @@ -5,6 +5,7 @@ A portable, scalable eukaryotic genome annotation pipeline implemented in Nextfl
[![License: ISC](https://img.shields.io/badge/License-ISC-brightgreen.svg)](https://github.com/sanger-pathogens/companion/blob/master/LICENSE)
[![status](https://img.shields.io/badge/NAR-10.1093%2Fnar.gkw292-brightgreen.svg)](https://doi.org/10.1093/nar/gkw292)


## Content
* [Introduction](#introduction)
* [Dependencies](#dependencies)
Expand All @@ -17,7 +18,8 @@ A portable, scalable eukaryotic genome annotation pipeline implemented in Nextfl
* [License](#license)
* [Feedback/Issues](#feedbackissues)
* [Citation](#citation)



## Introduction
This software is a comprehensive computational pipeline for the annotation of eukaryotic genomes (like protozoan parasites). It performs the following tasks:

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