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gff3toembl on Mac OS X #28

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merged 2 commits into from
Mar 19, 2015
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@satta satta commented Mar 19, 2015

I just tested gff3toembl on my Mac and it works well with the fixes in this PR, provided that you install GenomeTools 1.5.4 or later (which fixed the Python bindings) and have the path to libgenometools.dylib in your $DYLD_LIBRARY_PATH (not $LD_LIBRARY_PATH as in Linux).

I also add a small fix allowing multiple runs on the same input file.

satta added 2 commits March 19, 2015 11:01
addresses Python 2.7 throwing a
'TypeError: comparison function must return int, not long'
this adds the gt '-force' option to force overwriting of the
preprocessed GFF3 file
andrewjpage added a commit that referenced this pull request Mar 19, 2015
@andrewjpage andrewjpage merged commit 61f0372 into sanger-pathogens:master Mar 19, 2015
@satta satta deleted the ss34_fixes branch March 19, 2015 11:26
@bewt85 bewt85 mentioned this pull request Mar 19, 2015
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