Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update README and version #29

Merged
merged 2 commits into from
Mar 20, 2015
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 6 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,11 @@ Converts gff3 files to emble files for uploading to EBI.
NB this implements some EBI specific conventions and is not a generic conversion tool.

## Installation
- install Genometools, including python binding
- make sure the library is in your `LD_LIBRARY_PATH` and your python is in `PYTHONPATH`
- install Genometools
- install Genometools python bindings
- make sure python is in `PYTHONPATH` and the `gt` binaries in your `PATH`
- on linux, set `LD_LIBRARY_PATH` to point to `libgenometools.dylib`
- on Mac OS X, set `DYLD_LIBRARY_PATH` to point to `libgenometools.dylib`
- `git clone <this repo>`
- `python setup.py install`

Expand All @@ -25,4 +28,4 @@ gff3_to_embl --authors 'John' --title 'Some title' --publication 'Some journal'
Run `python setup.py nosetests`

## Known Issues
Genometools doesnt currently work on OSX.
This doesn't work with some versions of Genometools on Mac OS X; it appears to work with Genometools 1.5.4
2 changes: 1 addition & 1 deletion setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ def read(fname):

setup(
name='gff3toembl',
version='0.5.0',
version='0.5.1',
description='Convert a GFF3 file to EMBL format for submission',
long_description=read('README.md'),
packages = find_packages(),
Expand Down