removve duplicate exons in plot_primer_locs()

sanjaynagi · Oct 11, 2024 · e07ca24 · e07ca24
1 parent 02d7e62
commit e07ca24
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Showing 3 changed files with 5 additions and 3 deletions.
diff --git a/AnoPrimer/evaluate.py b/AnoPrimer/evaluate.py
@@ -270,6 +270,9 @@ def plot_primer_locs(
             print("No exons in close proximity for loc plot")
             return
 
+        # remove duplicate exons from different transcripts
+        locgff = locgff.drop_duplicates("Name")
+
         # Set up the plot
         fig, ax = plt.subplots(1, 1, figsize=[16, 4])
         self._configure_plot_axes(ax, min_, max_, start, end)

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "AnoPrimer"
-version = "2.0.4"
+version = "2.0.5"
 description = "A package to design primers in Anopheles gambiae whilst considering genetic variation with malariagen_data"
 readme = "README.md"
 documentation = "https://sanjaynagi.github.io/anoprimer/latest/"

diff --git a/tests/run_ci_notebooks.sh b/tests/run_ci_notebooks.sh
@@ -1,8 +1,7 @@
-
+papermill notebooks/AnoPrimer-long.ipynb tests/probe_run.ipynb -k AnoPrimer -f tests/probe_Params.json &&
 papermill notebooks/AnoPrimer-long.ipynb tests/qPCR_run.ipynb -k AnoPrimer -f tests/cDNA_Params.json &&
 papermill notebooks/AnoPrimer-long.ipynb tests/qPCR2_run.ipynb -k AnoPrimer -f tests/cDNA_Params_2.json &&
 papermill notebooks/AnoPrimer-long.ipynb tests/gDNA_run.ipynb -k AnoPrimer -f tests/gDNA_probe_Params.json &&
-papermill notebooks/AnoPrimer-long.ipynb tests/probe_run.ipynb -k AnoPrimer -f tests/probe_Params.json &&
 papermill notebooks/AnoPrimer-long.ipynb tests/qPCR_run.ipynb -k AnoPrimer -f tests/cDNA_Params_fun.json &&
 papermill notebooks/AnoPrimer-long.ipynb tests/qPCR2_run.ipynb -k AnoPrimer -f tests/cDNA_Params_2_fun.json &&
 papermill notebooks/AnoPrimer-long.ipynb tests/gDNA_run.ipynb -k AnoPrimer -f tests/gDNA_probe_Params_fun.json &&