feat: add logs to refgenie rules

sansterbioanalytics · Mar 28, 2023 · fce4bb0 · fce4bb0
1 parent ee3bad5
commit fce4bb0
Showing 1 changed file with 8 additions and 4 deletions.
diff --git a/bio/refgenie/test/Snakefile b/bio/refgenie/test/Snakefile
@@ -1,21 +1,25 @@
 rule obtain_asset:
     output:
         # the name refers to the refgenie seek key (see attributes on http://refgenomes.databio.org)
-        fai="refs/genome.fasta"
+        fai="refs/genome.fasta",
         # Multiple outputs/seek keys are possible here.
     params:
         genome="human_alu",
         asset="fasta",
-        tag="default"
+        tag="default",
+    log:
+        "logs/refgenie/obtain_large_asset.log",
     wrapper:
         "master/bio/refgenie"
 
 rule obtain_large_asset:
     output:
-        star_index=directory("refs/star_index/hg38/star_index")
+        star_index=directory("refs/star_index/hg38/star_index"),
     params:
         genome="hg38",
         asset="star_index",
-        tag="default"
+        tag="default",
+    log:
+        "logs/refgenie/obtain_large_asset.log",
     wrapper:
         "master/bio/refgenie"