v1.26.0

Features

• add logs to refgenie rules (fce4bb0)
• added vsearch wrapper (#1149) (79342b7)
• also define overhang on params.extra (#1173) (7e63821)
• automate inference of index name (#1169) (0d2c92a)
• Enhance deeptools compute matrix (#1236) (a44bef5)
• Lofreq indelqual wrapper (#1166) (e2215f2)
• update datavzrd 2.18.1 (#1171) (00b9b1c)

Bug Fixes

• allow for arbitrary filename prefixes in the optitype wrapper (#500) (0bf7175)
• Allow for large assets in refgenie (1c99871)
• force string in reference_prefix (fe7b05a)
• formatting refgenie (ee3bad5)
• handle refgenconf write lock error (4d3758c)
• read-only conf acces for concurrent rules dl (d0dcc61)
• remove input string from rsem wrapper (73e3a02)
• reorder to prioritize bioconda (8eb7a1d)
• switch to Path in order to resolve basename more robustly (0d10e6a)

Performance Improvements

• autobump bio/bazam (#1187) (df7d90e)
• autobump bio/bbtools/bbduk (#1269) (86c7a0a)
• autobump bio/bcftools/call (#1181) (7fbc611)
• autobump bio/bcftools/concat (#1183) (93d7103)
• autobump bio/bcftools/merge (#1266) (b0a2c88)
• autobump bio/bcftools/norm (#1192) (9e06c59)
• autobump bio/bcftools/norm (#1212) (3667c6b)
• autobump bio/bcftools/sort (#1257) (dd478d2)
• autobump bio/bcftools/stats (#1197) (c844da5)
• autobump bio/bellerophon (#1199) (a2fe593)
• autobump bio/bismark/bismark_methylation_extractor (#1220) (05964de)
• autobump bio/bismark/bismark2bedGraph (#1258) (3eb60c2)
• autobump bio/bismark/bismark2summary (#1235) (74a9de2)
• autobump bio/bowtie2/align (#1206) (d3544b0)
• autobump bio/busco (#1255) (402aaaa)
• autobump bio/bwa-mem2/mem (#1202) (90e1d60)
• autobump bio/bwa-meme/index (#1180) (1f0378c)
• autobump bio/bwa-meme/mem (#1163) (5236667)
• autobump bio/bwa-meme/mem (#1231) (1ad2b8d)
• autobump bio/bwa-memx/index (#1207) (59be498)
• autobump bio/bwa-memx/mem (#1268) (a2fe8b9)
• autobump bio/bwa/sampe (#1225) (d759781)
• autobump bio/cutadapt/pe (#1219) (44f346e)
• autobump bio/cutadapt/se (#1253) (95c8278)
• autobump bio/delly (#1267) (75a0d1a)
• autobump bio/diamond/blastp (#1161) (1f89877)
• autobump bio/diamond/blastx (#1221) (480fc20)
• autobump bio/diamond/makedb (#1223) (49d1484)
• autobump bio/fgbio/collectduplexseqmetrics (#1201) ...