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Carotid_Atherosclerosis_Proteomics

Label-free quantitative proteomics analyses were made for unique serum samples collected as part of a The Cardiovascular Risk in Young Finns Study. The comparison was made between subjects in whom ultrasound examination had identified plaque formation in the carotid artery, with controls matched by age, gender, body weight and systolic blood pressure (n = 43 vs. 43). To gain an overview of lower abundant proteins, analyses were made of the samples with depletion of the abundant proteins.

Publication

More details about the work can be accessed through here.

Bhosale SD, Moulder R, Venäläinen MS, Koskinen JS, Pitkänen N, Juonala MT, Kähönen MAP, Lehtimäki TJ, Viikari JSA, Elo LL, Goodlett DR, Lahesmaa R, Raitakari OT., Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis., Sci Rep 2018 Jun 15;8(1):9209.

Repository contents

It contains necessary information related to data matrices and code to reproduce the analysis from publication.

Data availability

The LC-MS/MS data are available from the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD008278. The SRM verification data are available from the ProteomeXchange Consortium via the PASSEL partner repository with dataset identifier PASS01146.

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