Tests

use relative files for coverage #3440

	name: Tests

	on:
	push:
	pull_request:
	workflow_dispatch:
	schedule:
	- cron: '17 22 * * *'

	permissions: read-all

	env:
	OMP_NUM_THREADS: 2

	jobs:
	tests:
	name: Tests
	runs-on: ubuntu-latest
	container:
	image: ghcr.io/sblauth/cashocs:main
	options: --user=root

	steps:
	- name: Delete current installation in docker image
	shell: bash
	run: \|
	source /usr/local/bin/_entrypoint.sh
	pip uninstall -y cashocs
	rm -R /home/mambauser/cashocs

	- name: Checkout repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

	- name: Install cashocs
	shell: bash
	run: \|
	source /usr/local/bin/_entrypoint.sh
	pip install .[all]

	- name: Run tests
	shell: bash
	run: \|
	source /usr/local/bin/_entrypoint.sh
	python3 -m pytest -vv --cov=cashocs --cov-report=xml tests/

	- name: Coverage comment
	id: coverage_comment
	uses: py-cov-action/python-coverage-comment-action@v3
	with:
	GITHUB_TOKEN: ${{ github.token }}
	COVERAGE_DATA_BRANCH: coverage

	- name: Store Pull Request comment to be posted
	uses: actions/upload-artifact@v4
	if: steps.coverage_comment.outputs.COMMENT_FILE_WRITTEN == 'true'
	with:
	# If you use a different name, update COMMENT_ARTIFACT_NAME accordingly
	name: python-coverage-comment-action
	# If you use a different name, update COMMENT_FILENAME accordingly
	path: python-coverage-comment-action.txt

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