Merge branch 'main' into dev/topology_visualization

sblauth · Oct 25, 2023 · 4a309b7 · 4a309b7
2 parents 7a28a09 + 09cb14d
commit 4a309b7
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Showing 11 changed files with 20 additions and 14 deletions.
diff --git a/.github/docker/Dockerfile b/.github/docker/Dockerfile
@@ -17,6 +17,7 @@ RUN micromamba install -y -n base -c conda-forge \
       coverage">=7.1.0" \
       mpich \
       petsc"<=3.19" \
+      mpi4py"<=3.1.4" \
       python=3.11 && \
    micromamba clean --all --yes
 

diff --git a/.github/workflows/codeql-analysis.yml b/.github/workflows/codeql-analysis.yml
@@ -37,7 +37,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     # Initializes the CodeQL tools for scanning.
     - name: Initialize CodeQL

diff --git a/.github/workflows/docker.yml b/.github/workflows/docker.yml
@@ -16,7 +16,7 @@ jobs:
       TAG_PREFIX: ${{ steps.tag_name.outputs.TAG_PREFIX }}
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4.1.0
+        uses: actions/checkout@v4.1.1
 
       - name: Get tag name
         id: tag_name
@@ -47,7 +47,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4.1.0
+        uses: actions/checkout@v4.1.1
 
       - name: Log into the Dockerhub registry
         run: echo ${{ secrets.DOCKERHUB_TOKEN }} | docker login -u ${{ secrets.DOCKERHUB_USERNAME }} --password-stdin

diff --git a/.github/workflows/docker_ghcr.yml b/.github/workflows/docker_ghcr.yml
@@ -30,7 +30,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4.1.0
+        uses: actions/checkout@v4.1.1
 
       - name: Log in to the Container registry
         uses: docker/login-action@v3

diff --git a/.github/workflows/ossar-analysis.yml b/.github/workflows/ossar-analysis.yml
@@ -21,7 +21,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     # Ensure a compatible version of dotnet is installed.
     # The [Microsoft Security Code Analysis CLI](https://aka.ms/mscadocs) is built with dotnet v3.1.201.

diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
@@ -22,7 +22,7 @@ jobs:
         rm -R /home/mambauser/cashocs
 
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0 
+      uses: actions/checkout@v4.1.1 
 
     - name: Install cashocs
       shell: bash
@@ -45,7 +45,7 @@ jobs:
     steps:
 
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
 
     - name: Get tag name
@@ -78,7 +78,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     - name: Set up Python 3.11
       uses: actions/setup-python@v4

diff --git a/.github/workflows/test_demos.yml b/.github/workflows/test_demos.yml
@@ -17,7 +17,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     - name: Install micromamba
       uses: mamba-org/setup-micromamba@v1
@@ -30,6 +30,7 @@ jobs:
           gmsh>=4.8
           matplotlib
           petsc<=3.19
+          mpi4py<=3.1.4
           python=3.11
 
     - name: Install package
@@ -55,7 +56,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     - name: Install micromamba
       uses: mamba-org/setup-micromamba@v1
@@ -69,6 +70,7 @@ jobs:
           mpich
           matplotlib
           petsc<=3.19
+          mpi4py<=3.1.4
           python=3.11
 
     - name: Install package

diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -27,7 +27,7 @@ jobs:
         rm -R /home/mambauser/cashocs
 
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0 
+      uses: actions/checkout@v4.1.1 
 
     - name: Install cashocs
       shell: bash

diff --git a/.github/workflows/tests_macos.yml b/.github/workflows/tests_macos.yml
@@ -20,7 +20,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     - name: Install micromamba
       uses: mamba-org/setup-micromamba@v1
@@ -33,6 +33,7 @@ jobs:
           pytest>=7.2.0
           gmsh>=4.8
           petsc<=3.19
+          mpi4py<=3.1.4
 
     - name: Install package
       run: |

diff --git a/.github/workflows/tests_parallel.yml b/.github/workflows/tests_parallel.yml
@@ -24,7 +24,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     - name: Install micromamba
       uses: mamba-org/setup-micromamba@v1
@@ -36,6 +36,7 @@ jobs:
           pytest>=7.2.0
           gmsh>=4.8
           petsc<=3.19
+          mpi4py<=3.1.4
           ${{ matrix.mpi }}
           python=${{ matrix.python-version }}
 

diff --git a/.github/workflows/tests_serial.yml b/.github/workflows/tests_serial.yml
@@ -21,7 +21,7 @@ jobs:
 
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4.1.0
+      uses: actions/checkout@v4.1.1
 
     - name: Install micromamba
       uses: mamba-org/setup-micromamba@v1
@@ -33,6 +33,7 @@ jobs:
           pytest>=7.2.0
           gmsh>=4.8
           petsc<=3.19
+          mpi4py<=3.1.4
           python=${{ matrix.python-version }}
 
     - name: Install package