Post-publication

Minor updates following publication 🎉 :

• Updated citations in README.md and CITATIONS.cff to the Genome Biology publication
• Updated the {renv} snapshot

Full Changelog: 2021100...2021111

Revisions

Changes following the first round of revisions:

• Submit the repository to Zenodo and document in README.md
• Add the preprint reference to README.md and add CITATION.cff
• Update some packages used for analysis and add a few new ones
• Update the database version used for analysis to 2021-09-26
• Revise the models for tools
• Add model fits to model plots
• Add new plots showing the delay in adding tools to the database, abstract word clouds and correlations between metrics
• Add PDF figure output (and adjust scaling for this)
• Other minor updates to figures

Full Changelog: 2021081...2021100

Submission

Version of code used for analysis in bioRxiv and journal submission