Issues: scholl-lab/vcf-filtering
Enhancement: Add Option to Filter by Position or Specific Var...
#29
opened Jun 21, 2024 by
berntpopp
Open
1
Feature request: add option to perform gene burden analysis
#24
opened Jun 19, 2024 by
berntpopp
Open
3
Feature Request: Add Script to Generate IGV Browser Screenshots
#32
opened Jun 21, 2024 by
berntpopp
Open
1
Issues list
BUG: when providing a gene list file, the bed file is not correctly generated
enhancement
New feature or request
#57
opened Nov 29, 2024 by
berntpopp
Feature request: Add a Snakemake Script
enhancement
New feature or request
#56
opened Sep 5, 2024 by
berntpopp
Feature Request: Add Option to Generate Subset BAMs for Screenshots and Variant Confirmation
enhancement
New feature or request
#55
opened Aug 1, 2024 by
berntpopp
Bug: Empty Outputs in Tumor-Only Analysis with Numbered GEN[1] Fields
bug
Something isn't working
#54
opened Jul 19, 2024 by
berntpopp
Bug: Fields with Commas Converted to Numbers in Excel
bug
Something isn't working
#53
opened Jul 19, 2024 by
berntpopp
Bug: Improve Debug Level Implementation for Clarity and Consistency
bug
Something isn't working
#52
opened Jul 19, 2024 by
berntpopp
Bug: Fixed output separator causing Excel conversion issues
bug
Something isn't working
#50
opened Jul 19, 2024 by
berntpopp
Bug: Samples file required even if empty, causing pipeline failure
bug
Something isn't working
#49
opened Jul 19, 2024 by
berntpopp
Bug: Incorrect output file format when specifying XLSX output without output file
bug
Something isn't working
#48
opened Jul 19, 2024 by
berntpopp
Bug: Genotypes Not Added in replace_gt_with_sample.sh When Using Probands File
bug
Something isn't working
#47
opened Jul 13, 2024 by
berntpopp
Feature request: Change workflow to allow a unified sample file
enhancement
New feature or request
#43
opened Jul 12, 2024 by
berntpopp
Tests: Add tests to all scripts and add test data
enhancement
New feature or request
#42
opened Jul 12, 2024 by
berntpopp
Feature request: Filtering Presets for Main Script
enhancement
New feature or request
#37
opened Jul 10, 2024 by
berntpopp
Feature request: Conda env as parameter
enhancement
New feature or request
#35
opened Jun 27, 2024 by
berntpopp
Documentation: Add Installation Instructions for All Required Tools
documentation
Improvements or additions to documentation
#33
opened Jun 21, 2024 by
berntpopp
Feature Request: Add Script to Generate IGV Browser Screenshots
enhancement
New feature or request
#32
opened Jun 21, 2024 by
berntpopp
Documentation: Add Detailed Examples for All Scripts
documentation
Improvements or additions to documentation
#31
opened Jun 21, 2024 by
berntpopp
Documentation: Update README and Usage Description with Examples for All Scripts
documentation
Improvements or additions to documentation
#30
opened Jun 21, 2024 by
berntpopp
Enhancement: Add Option to Filter by Position or Specific Variants
enhancement
New feature or request
#29
opened Jun 21, 2024 by
berntpopp
Enhancement: Add Interactive CLI Prompts
enhancement
New feature or request
#28
opened Jun 21, 2024 by
berntpopp
Documentaion: Filter Logic and Available Annotations
documentation
Improvements or additions to documentation
#27
opened Jun 21, 2024 by
berntpopp
Refactor: main script in main folder and helpers in subfolders
enhancement
New feature or request
#26
opened Jun 19, 2024 by
berntpopp
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