[MRG] Fix batch issue when generating features + add sample_weight in deep models #1256
Workflow file for this run
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name: Testing | |
on: # yamllint disable-line rule:truthy | |
workflow_dispatch: | |
pull_request: | |
branches: | |
- 'main' | |
push: | |
branches: | |
- 'main' | |
create: | |
branches: | |
- 'main' | |
tags: | |
- '**' | |
jobs: | |
Lint: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
# Install skada | |
- name: Checking Out Repository | |
uses: actions/checkout@v2 | |
# Cache 'skada' datasets | |
- name: Create/Restore Skada Data Cache | |
id: cache-skada_datasets | |
uses: actions/cache@v2 | |
with: | |
path: ~/skada_datasets | |
key: ${{ runner.os }}-v3 | |
# Install Python & Packages | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- run: which python | |
- name: Lint with pre-commit | |
run: | | |
pip install pre-commit | |
pre-commit install --install-hooks | |
pre-commit run --all-files | |
Test-minimal: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
# Install skada | |
- name: Checking Out Repository | |
uses: actions/checkout@v2 | |
# Cache 'skada' datasets | |
- name: Create/Restore Skada Data Cache | |
id: cache-skada_datasets | |
uses: actions/cache@v2 | |
with: | |
path: ~/skada_datasets | |
key: ${{ runner.os }}-v3 | |
# Install Python & Packages | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- run: which python | |
- name: Install dependencies | |
run: | | |
python -m pip install --user --upgrade --progress-bar off pip | |
python -m pip install --user -r requirements.txt | |
python -m pip install --user --upgrade pytest pytest-cov codecov | |
- name: Install 'skada' package | |
run: | | |
python -m pip install --user -e . | |
# Run Tests | |
- name: Run Tests without torch | |
run: pytest skada/ --verbose --cov=skada --cov-report term | |
# Codecov | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v3 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
Test: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
# Install skada | |
- name: Checking Out Repository | |
uses: actions/checkout@v2 | |
# Cache 'skada' datasets | |
- name: Create/Restore Skada Data Cache | |
id: cache-skada_datasets | |
uses: actions/cache@v2 | |
with: | |
path: ~/skada_datasets | |
key: ${{ runner.os }}-v3 | |
# Install Python & Packages | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: "3.10" | |
- run: which python | |
- name: Install dependencies | |
run: | | |
python -m pip install --user --upgrade --progress-bar off pip | |
python -m pip install --user -r requirements_full.txt | |
python -m pip install --user --upgrade pytest pytest-cov codecov | |
- name: Install 'skada' package | |
run: | | |
python -m pip install --user -e . | |
# Run Tests | |
- name: Run Tests with torch | |
run: pytest skada/ --verbose --cov=skada --cov-report term | |
# Codecov | |
- name: Upload coverage reports to Codecov | |
uses: codecov/codecov-action@v3 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |