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[MRG] Fix batch issue when generating features + add sample_weight in deep models #1256

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[MRG] Fix batch issue when generating features + add sample_weight in deep models

[MRG] Fix batch issue when generating features + add sample_weight in deep models #1256

Workflow file for this run

.github/workflows/testing.yml at 39448c9
name: Testing
on: # yamllint disable-line rule:truthy
workflow_dispatch:
pull_request:
branches:
- 'main'
push:
branches:
- 'main'
create:
branches:
- 'main'
tags:
- '**'
jobs:
Lint:
runs-on: ubuntu-latest
strategy:
fail-fast: false
defaults:
run:
shell: bash -l {0}
steps:
# Install skada
- name: Checking Out Repository
uses: actions/checkout@v2
# Cache 'skada' datasets
- name: Create/Restore Skada Data Cache
id: cache-skada_datasets
uses: actions/cache@v2
with:
path: ~/skada_datasets
key: ${{ runner.os }}-v3
# Install Python & Packages
- uses: actions/setup-python@v4
with:
python-version: "3.10"
- run: which python
- name: Lint with pre-commit
run: |
pip install pre-commit
pre-commit install --install-hooks
pre-commit run --all-files
Test-minimal:
runs-on: ubuntu-latest
strategy:
fail-fast: false
defaults:
run:
shell: bash -l {0}
steps:
# Install skada
- name: Checking Out Repository
uses: actions/checkout@v2
# Cache 'skada' datasets
- name: Create/Restore Skada Data Cache
id: cache-skada_datasets
uses: actions/cache@v2
with:
path: ~/skada_datasets
key: ${{ runner.os }}-v3
# Install Python & Packages
- uses: actions/setup-python@v4
with:
python-version: "3.10"
- run: which python
- name: Install dependencies
run: |
python -m pip install --user --upgrade --progress-bar off pip
python -m pip install --user -r requirements.txt
python -m pip install --user --upgrade pytest pytest-cov codecov
- name: Install 'skada' package
run: |
python -m pip install --user -e .
# Run Tests
- name: Run Tests without torch
run: pytest skada/ --verbose --cov=skada --cov-report term
# Codecov
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v3
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
Test:
runs-on: ubuntu-latest
strategy:
fail-fast: false
defaults:
run:
shell: bash -l {0}
steps:
# Install skada
- name: Checking Out Repository
uses: actions/checkout@v2
# Cache 'skada' datasets
- name: Create/Restore Skada Data Cache
id: cache-skada_datasets
uses: actions/cache@v2
with:
path: ~/skada_datasets
key: ${{ runner.os }}-v3
# Install Python & Packages
- uses: actions/setup-python@v4
with:
python-version: "3.10"
- run: which python
- name: Install dependencies
run: |
python -m pip install --user --upgrade --progress-bar off pip
python -m pip install --user -r requirements_full.txt
python -m pip install --user --upgrade pytest pytest-cov codecov
- name: Install 'skada' package
run: |
python -m pip install --user -e .
# Run Tests
- name: Run Tests with torch
run: pytest skada/ --verbose --cov=skada --cov-report term
# Codecov
- name: Upload coverage reports to Codecov
uses: codecov/codecov-action@v3
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}