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In your .bashrc please do:
export PATH="/path/to/correlation_flow/bin":$PATH
export PATH="/path/to/correlation_flow/finta_test_retest_evaluation:$PATH"
Create a new virtualenv with python3.8:
virtualenv env --python=python3.8
pip install -r requirements.txt
Please clone tractometry_flow-minimal and registration_flow
Launch the command:
finta_test_retest.sh -i inputs/ -t /path/to/tractometry_flow-minimal -r /path/to/registration_flow -c /path/to/correlation_flow -s config_tr_example.json -b config_rbx_atlas_v10.json -o out_folder -n NUM_PROCESSES -a /path/to/mni_masked.nii.gz