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Sherbrooke Connectivity Imaging Lab

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI.

Sherbrooke Connectivity Imaging Laboratory

The lab is headed by Professor Maxime Descoteaux, Ph.D and focuses on brain connectivity from state-of-the-art diffusion MRI acquisition, reconstruction, tractography, processing and visualization. The aim of the SCIL is to better understand structural connectivity, develop novel tractography algorithms, validate them and use them for human brain mapping and connectomics applications.

Useful links:

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  1. scilpy scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    Python 62 60

  2. tractoflow tractoflow Public

    TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

    Nextflow 53 22

  3. scil-documentation scil-documentation Public

    Documentation for the SCIL

    Python 4 15

Repositories

Showing 10 of 53 repositories
  • containers-scilus Public

    Files needed to build a container to run all scilus flows.

    scilus/containers-scilus’s past year of commit activity
    Dockerfile 2 4 1 1 Updated Nov 26, 2024
  • nf-pediatric Public

    nf-pediatric is an end-to-end connectomics pipeline for pediatric (0-18y) dMRI and sMRI brain scans.

    scilus/nf-pediatric’s past year of commit activity
    Nextflow 2 MIT 1 1 0 Updated Nov 25, 2024
  • nf-neuro Public
    scilus/nf-neuro’s past year of commit activity
    Nextflow 4 GPL-3.0 7 7 5 Updated Nov 25, 2024
  • scilpy Public

    The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

    scilus/scilpy’s past year of commit activity
    Python 62 60 47 14 Updated Nov 20, 2024
  • scilus_website Public

    SCIL website

    scilus/scilus_website’s past year of commit activity
    HTML 0 MIT 6 0 0 Updated Nov 19, 2024
  • Infant-DWI Public

    Complete pipeline to perform tractography from infant diffusion MRI data.

    scilus/Infant-DWI’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Nov 17, 2024
  • scilus/mouseflow_documentation’s past year of commit activity
    Python 0 0 0 0 Updated Nov 11, 2024
  • scilus/combine_flows’s past year of commit activity
    Shell 0 6 1 2 Updated Nov 6, 2024
  • scilus/neurogister’s past year of commit activity
    Python 1 1 0 0 Updated Nov 5, 2024
  • scilus/tractometry_flow’s past year of commit activity
    Nextflow 0 12 0 1 Updated Nov 4, 2024

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