Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

(feat): read_elem_as_dask method #1469

Merged
merged 160 commits into from
Jul 23, 2024
Merged

(feat): read_elem_as_dask method #1469

merged 160 commits into from
Jul 23, 2024

Commits on Apr 11, 2024

  1. (feat): read_elem_lazy method

    @ilan-gold
    ilan-gold committed Apr 11, 2024
    Configuration menu
    Copy the full SHA
    d111f04 View commit details
    Browse the repository at this point in the history

  2. (revert): error message

    @ilan-gold
    ilan-gold committed Apr 11, 2024
    Configuration menu
    Copy the full SHA
    00be7f0 View commit details
    Browse the repository at this point in the history

  3. (refactor): declare is_csc reading elem directly in h5

    @ilan-gold
    ilan-gold committed Apr 11, 2024
    Configuration menu
    Copy the full SHA
    fd635d7 View commit details
    Browse the repository at this point in the history

Commits on Apr 12, 2024

  1. (chore): read_elem_lazy -> read_elem_as_dask

    @ilan-gold
    ilan-gold committed Apr 12, 2024
    Configuration menu
    Copy the full SHA
    f5e7fda View commit details
    Browse the repository at this point in the history

  2. (chore): remove string handling

    @ilan-gold
    ilan-gold committed Apr 12, 2024
    Configuration menu
    Copy the full SHA
    ae5396c View commit details
    Browse the repository at this point in the history

  3. (refactor): use elem for h5 where posssble

    @ilan-gold
    ilan-gold committed Apr 12, 2024
    Configuration menu
    Copy the full SHA
    664336a View commit details
    Browse the repository at this point in the history

Commits on Apr 17, 2024

  1. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Apr 17, 2024
    Configuration menu
    Copy the full SHA
    2370215 View commit details
    Browse the repository at this point in the history

  2. (chore): remove invlaud syntax

    @ilan-gold
    ilan-gold committed Apr 17, 2024
    Configuration menu
    Copy the full SHA
    52002b6 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'ig/read_dask_elem' of github.com:scverse/anndata into i… 

    …g/read_dask_elem
    @ilan-gold
    ilan-gold committed Apr 17, 2024
    Configuration menu
    Copy the full SHA
    5ab1ad1 View commit details
    Browse the repository at this point in the history

  4. (fix): put dask import inside function

    @ilan-gold
    ilan-gold committed Apr 17, 2024
    Configuration menu
    Copy the full SHA
    aa1006e View commit details
    Browse the repository at this point in the history

  5. (refactor): try maybe open?

    @ilan-gold
    ilan-gold committed Apr 17, 2024
    Configuration menu
    Copy the full SHA
    dda7d83 View commit details
    Browse the repository at this point in the history

Commits on May 27, 2024

  1. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold committed May 27, 2024
    Configuration menu
    Copy the full SHA
    fd418f0 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored May 27, 2024
    Configuration menu
    Copy the full SHA
    23b0bfd View commit details
    Browse the repository at this point in the history

Commits on Jun 3, 2024

  1. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Jun 3, 2024
    Configuration menu
    Copy the full SHA
    97b8031 View commit details
    Browse the repository at this point in the history

  2. (fix): revert encoding-version

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    1fc4cc3 View commit details
    Browse the repository at this point in the history

  3. (chore): document create_sparse_store test function

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    5ca71ea View commit details
    Browse the repository at this point in the history

  4. (chore): sort indices to prevent warning

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    3672c18 View commit details
    Browse the repository at this point in the history

  5. (fix): remove utility function make_dask_array

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    33c3599 View commit details
    Browse the repository at this point in the history

  6. (chore): read_sparse_as_dask_h5 -> read_sparse_as_dask

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    157e710 View commit details
    Browse the repository at this point in the history

  7. (feat): make params of h5_chunks and stride

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    375000d View commit details
    Browse the repository at this point in the history

  8. (chore): add distributed test

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    241904a View commit details
    Browse the repository at this point in the history

  9. (fix): TypeVar bind

    @ilan-gold
    ilan-gold committed Jun 3, 2024
    Configuration menu
    Copy the full SHA
    42d0d22 View commit details
    Browse the repository at this point in the history

Commits on Jun 4, 2024

  1. (chore): release note

    @ilan-gold
    ilan-gold committed Jun 4, 2024
    Configuration menu
    Copy the full SHA
    0bba2c0 View commit details
    Browse the repository at this point in the history

Commits on Jun 5, 2024

  1. (chore): 0.10.8 -> 0.11.0

    @ilan-gold
    ilan-gold committed Jun 5, 2024
    Configuration menu
    Copy the full SHA
    0d0b43a View commit details
    Browse the repository at this point in the history

Commits on Jun 26, 2024

  1. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Jun 26, 2024
    Configuration menu
    Copy the full SHA
    762d4c6 View commit details
    Browse the repository at this point in the history

  2. (fix): ruff for default pytest.fixture scope

    @ilan-gold
    ilan-gold committed Jun 26, 2024
    Configuration menu
    Copy the full SHA
    c935fe0 View commit details
    Browse the repository at this point in the history

Commits on Jul 1, 2024

  1. Apply suggestions from code review 

    Co-authored-by: Philipp A. <flying-sheep@web.de>
    @ilan-gold @flying-sheep
    ilan-gold and flying-sheep authored Jul 1, 2024
    Configuration menu
    Copy the full SHA
    23e0ea2 View commit details
    Browse the repository at this point in the history

  2. (fix): Any to DaskArray

    @ilan-gold
    ilan-gold committed Jul 1, 2024
    Configuration menu
    Copy the full SHA
    5b96c77 View commit details
    Browse the repository at this point in the history

  3. (fix): type make_index + fix undeclared

    @ilan-gold
    ilan-gold committed Jul 1, 2024
    Configuration menu
    Copy the full SHA
    0907a4e View commit details
    Browse the repository at this point in the history

  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Jul 1, 2024
    Configuration menu
    Copy the full SHA
    20ced16 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Jul 1, 2024
    Configuration menu
    Copy the full SHA
    36ae8f2 View commit details
    Browse the repository at this point in the history

  6. fix rest

    @flying-sheep
    flying-sheep committed Jul 1, 2024
    Configuration menu
    Copy the full SHA
    bb6607e View commit details
    Browse the repository at this point in the history

Commits on Jul 2, 2024

  1. (fix): use chunks kwarg

    @ilan-gold
    ilan-gold committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    419691b View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Jul 2, 2024
    Configuration menu
    Copy the full SHA
    a23df34 View commit details
    Browse the repository at this point in the history

  3. (feat): expose chunks as an option to read_elem_as_dask via `data… 

    …set_kwargs`
    @ilan-gold
    ilan-gold committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    fd2376a View commit details
    Browse the repository at this point in the history

  4. Merge branch 'ig/read_dask_elem' of github.com:scverse/anndata into i… 

    …g/read_dask_elem
    @ilan-gold
    ilan-gold committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    ae723d0 View commit details
    Browse the repository at this point in the history

  5. (fix): test_read_dispatched_null_case test

    @ilan-gold
    ilan-gold committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    42b1093 View commit details
    Browse the repository at this point in the history

  6. (fix): disallowed spread syntax?

    @ilan-gold
    ilan-gold committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    78de057 View commit details
    Browse the repository at this point in the history

  7. (refactor): reuse compute_chunk_layout_for_axis_shape functionality

    @ilan-gold
    ilan-gold committed Jul 2, 2024
    Configuration menu
    Copy the full SHA
    717b997 View commit details
    Browse the repository at this point in the history

Commits on Jul 3, 2024

  1. (fix): remove unneeded slice arguments

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    2b86293 View commit details
    Browse the repository at this point in the history

  2. (fix): revert message

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    8d5a9df View commit details
    Browse the repository at this point in the history

  3. (refactor): make_index -> make_block_indexer

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    449fc1a View commit details
    Browse the repository at this point in the history

  4. (fix): export from experimental

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    1522de3 View commit details
    Browse the repository at this point in the history

  5. (fix): callback signature for `test_read_dispatched_null_case

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    71c150d View commit details
    Browse the repository at this point in the history

  6. (chore): get_elem_name helper

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    b441366 View commit details
    Browse the repository at this point in the history

  7. (chore): use H5Group consistently

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    0307a1d View commit details
    Browse the repository at this point in the history

  8. (refactor): make chunks public facing API instead of dataset_kwargs

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    ee075cd View commit details
    Browse the repository at this point in the history

  9. (fix): regsiter for group not array

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    89acec4 View commit details
    Browse the repository at this point in the history

  10. (chore): add warning test

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    48b7630 View commit details
    Browse the repository at this point in the history

  11. (chore): make arg order consistent

    @ilan-gold
    ilan-gold committed Jul 3, 2024
    Configuration menu
    Copy the full SHA
    8712582 View commit details
    Browse the repository at this point in the history

Commits on Jul 5, 2024

  1. (feat): add callback typing for read_dispatched

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    cda8aa7 View commit details
    Browse the repository at this point in the history

  2. (chore): use npt.NDArray

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    e8f62f4 View commit details
    Browse the repository at this point in the history

  3. (fix): remove uneceesary union

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    f6e48ac View commit details
    Browse the repository at this point in the history

  4. (chore): release note

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    4de3246 View commit details
    Browse the repository at this point in the history

  5. (fix); try protocol docs

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    ba817e0 View commit details
    Browse the repository at this point in the history

  6. (feat): create InMemoryElem + DictElemType to remove Any

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    438d28d View commit details
    Browse the repository at this point in the history

  7. (chore): refactor DictElemType -> InMemoryArrayOrScalarType for r… 

    …euse
    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    296ea3f View commit details
    Browse the repository at this point in the history

  8. (fix): use Union

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    cf13a57 View commit details
    Browse the repository at this point in the history

  9. (fix): more Union

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    d02ba49 View commit details
    Browse the repository at this point in the history

  10. (refactor): InMemoryElem -> InMemoryReadElem

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    6970a97 View commit details
    Browse the repository at this point in the history

  11. (chore): add needed types to public export + docs fix

    @ilan-gold
    ilan-gold committed Jul 5, 2024
    Configuration menu
    Copy the full SHA
    2282351 View commit details
    Browse the repository at this point in the history

Commits on Jul 8, 2024

  1. Merge branch 'main' into ig/read_dask_elem

    @flying-sheep
    flying-sheep committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    810cd0a View commit details
    Browse the repository at this point in the history

  2. (chore): type write_elem functions

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    a996081 View commit details
    Browse the repository at this point in the history

  3. (chore): create write_callback protocol

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    f6e457b View commit details
    Browse the repository at this point in the history

  4. Merge branch 'main' into ig/protocol_for_callback

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    a0b4057 View commit details
    Browse the repository at this point in the history

  5. (chore): export + docs

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    4416526 View commit details
    Browse the repository at this point in the history

  6. (fix): add string descriptions

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    fbe44f0 View commit details
    Browse the repository at this point in the history

  7. (fix): try sphinx protocol doc

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    1 Configuration menu
    Copy the full SHA
    8c1f01d View commit details
    Browse the repository at this point in the history

  8. (fix): try ignoring exports

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    a7d412a View commit details
    Browse the repository at this point in the history

  9. (fix): remap callback internal usages

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    4d56396 View commit details
    Browse the repository at this point in the history

  10. (fix): add docstring

    @ilan-gold
    ilan-gold committed Jul 8, 2024
    Configuration menu
    Copy the full SHA
    2012ee5 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2024

  1. Discard changes to pyproject.toml

    @flying-sheep
    flying-sheep authored Jul 9, 2024
    Configuration menu
    Copy the full SHA
    f65f065 View commit details
    Browse the repository at this point in the history

  2. re-add dep

    @flying-sheep
    flying-sheep committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    8f6ea49 View commit details
    Browse the repository at this point in the history

  3. Fix docs

    @flying-sheep
    flying-sheep committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    155a21e View commit details
    Browse the repository at this point in the history

  4. Almost works

    @flying-sheep
    flying-sheep committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    daae3e5 View commit details
    Browse the repository at this point in the history

  5. works!

    @flying-sheep
    flying-sheep committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    c415ae4 View commit details
    Browse the repository at this point in the history

  6. (chore): use pascal-case

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    00010b8 View commit details
    Browse the repository at this point in the history

  7. (feat): type read/write funcs in callback

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    0bd87fc View commit details
    Browse the repository at this point in the history

  8. (fix): use generic for Read as well.

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    5997678 View commit details
    Browse the repository at this point in the history

  9. (fix): need more aliases

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    f208332 View commit details
    Browse the repository at this point in the history

  10. Split table, format

    @flying-sheep
    flying-sheep committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    eb69fcb View commit details
    Browse the repository at this point in the history

  11. (refactor): move to _types file

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    477bbef View commit details
    Browse the repository at this point in the history

  12. Merge branch 'ig/protocol_for_callback' of github.com:scverse/anndata… 

    … into ig/protocol_for_callback
    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    103cad6 View commit details
    Browse the repository at this point in the history

  13. bump scanpydoc

    @flying-sheep
    flying-sheep committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    8d23f6f View commit details
    Browse the repository at this point in the history

  14. Some basic syntax fixes

    @flying-sheep
    flying-sheep committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    9b647c2 View commit details
    Browse the repository at this point in the history

  15. Merge branch 'ig/protocol_for_callback' into ig/read_dask_elem

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    d6d01bc View commit details
    Browse the repository at this point in the history

  16. (fix): change Read{Callback} type for kwargs

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    5ef93e1 View commit details
    Browse the repository at this point in the history

  17. (chore): test chunks argument

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    9cfe908 View commit details
    Browse the repository at this point in the history

  18. (fix): type read_recarray

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    99fc6db View commit details
    Browse the repository at this point in the history

  19. (fix): GroupyStorageType not StorageType

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    b5bccc3 View commit details
    Browse the repository at this point in the history

  20. (fix): little type fixes

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    e5ea2b0 View commit details
    Browse the repository at this point in the history

  21. (fix): clarify H5File typing

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    6ac72d6 View commit details
    Browse the repository at this point in the history

  22. (fix): dask doc

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    989dc65 View commit details
    Browse the repository at this point in the history

  23. (fix): dask docs

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    36b0207 View commit details
    Browse the repository at this point in the history

  24. Merge branch 'ig/protocol_for_callback' into ig/read_dask_elem

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    dadfb4d View commit details
    Browse the repository at this point in the history

  25. (fix): typing

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    ca6cf66 View commit details
    Browse the repository at this point in the history

  26. (fix): handle case when chunks is None

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    eabaf35 View commit details
    Browse the repository at this point in the history

  27. (feat): add string-array reading

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    4c398c3 View commit details
    Browse the repository at this point in the history

  28. (fix): remove string-array because it is not tested

    @ilan-gold
    ilan-gold committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    d6fc8a4 View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2024

  1. (refactor): clean up tests

    @ilan-gold
    ilan-gold committed Jul 10, 2024
    Configuration menu
    Copy the full SHA
    33aebb2 View commit details
    Browse the repository at this point in the history

  2. (fix): overfetching problem

    @ilan-gold
    ilan-gold committed Jul 10, 2024
    Configuration menu
    Copy the full SHA
    701cd85 View commit details
    Browse the repository at this point in the history

Commits on Jul 11, 2024

  1. Fix circular import

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    43b21a2 View commit details
    Browse the repository at this point in the history

  2. add some typing

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    0e22449 View commit details
    Browse the repository at this point in the history

  3. fix mapping types

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    ec546f4 View commit details
    Browse the repository at this point in the history

  4. Fix Read/Write

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    7c2e4da View commit details
    Browse the repository at this point in the history

  5. Fix one more

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    1ba5b99 View commit details
    Browse the repository at this point in the history

  6. unify names

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    49c0d49 View commit details
    Browse the repository at this point in the history

  7. claift ReadCallback signature

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    3666735 View commit details
    Browse the repository at this point in the history

  8. Fix type aliases

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    3a332ad View commit details
    Browse the repository at this point in the history

  9. (fix): clean up typing to use RWAble

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    d0f4d13 View commit details
    Browse the repository at this point in the history

  10. Merge branch 'main' into ig/protocol_for_callback

    @ilan-gold
    ilan-gold authored Jul 11, 2024
    Configuration menu
    Copy the full SHA
    6e89e14 View commit details
    Browse the repository at this point in the history

  11. (fix): use Union

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    ea29cfa View commit details
    Browse the repository at this point in the history

  12. (fix): add qualname override

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    f4ff236 View commit details
    Browse the repository at this point in the history

  13. (fix): ignore dask and masked array

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    f50b286 View commit details
    Browse the repository at this point in the history

  14. (fix): ignore erroneous class warning

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    712e085 View commit details
    Browse the repository at this point in the history

  15. (fix): upgrade scanpydoc

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    24dd18b View commit details
    Browse the repository at this point in the history

  16. (fix): use MutableMapping instead of dict due to broken docstring

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    79d3fdc View commit details
    Browse the repository at this point in the history

  17. Merge branch 'ig/protocol_for_callback' into ig/read_dask_elem

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    9a2be00 View commit details
    Browse the repository at this point in the history

  18. Add data docs

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    d3bcddf View commit details
    Browse the repository at this point in the history

  19. Revert "(fix): use MutableMapping instead of dict due to broken d… 

    …ocstring"

This reverts commit 79d3fdc.
    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    84fdc96 View commit details
    Browse the repository at this point in the history

  20. (fix): add clarification

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    2608bc3 View commit details
    Browse the repository at this point in the history

  21. Simplify

    @flying-sheep
    flying-sheep committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    e551e18 View commit details
    Browse the repository at this point in the history

  22. Merge branch 'ig/protocol_for_callback' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Jul 11, 2024
    Configuration menu
    Copy the full SHA
    13e3bb1 View commit details
    Browse the repository at this point in the history

  23. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    2935e45 View commit details
    Browse the repository at this point in the history

  24. Merge branch 'ig/read_dask_elem' of github.com:scverse/anndata into i… 

    …g/read_dask_elem
    @ilan-gold
    ilan-gold committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    bf0be15 View commit details
    Browse the repository at this point in the history

Commits on Jul 12, 2024

  1. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Jul 12, 2024
    Configuration menu
    Copy the full SHA
    9d37fc8 View commit details
    Browse the repository at this point in the history

  2. (fix): remove double dask intersphinx

    @ilan-gold
    ilan-gold authored Jul 12, 2024
    Configuration menu
    Copy the full SHA
    1ffe43e View commit details
    Browse the repository at this point in the history

  3. (fix): remove _types.DaskArray from type checking block

    @ilan-gold
    ilan-gold authored Jul 12, 2024
    Configuration menu
    Copy the full SHA
    f9df5bc View commit details
    Browse the repository at this point in the history

Commits on Jul 15, 2024

  1. (refactor): use block_info for resolving fetch location

    @ilan-gold
    ilan-gold committed Jul 15, 2024
    Configuration menu
    Copy the full SHA
    a85da39 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'ig/read_dask_elem' of github.com:scverse/anndata into i… 

    …g/read_dask_elem
    @ilan-gold
    ilan-gold committed Jul 15, 2024
    Configuration menu
    Copy the full SHA
    3bef77c View commit details
    Browse the repository at this point in the history

  3. (fix): dtype for reading

    @ilan-gold
    ilan-gold committed Jul 15, 2024
    Configuration menu
    Copy the full SHA
    899184f View commit details
    Browse the repository at this point in the history

Commits on Jul 16, 2024

  1. (fix): ignore import cycle problem (why??)

    @ilan-gold
    ilan-gold committed Jul 16, 2024
    Configuration menu
    Copy the full SHA
    efb70ec View commit details
    Browse the repository at this point in the history

  2. (fix): add issue

    @ilan-gold
    ilan-gold committed Jul 16, 2024
    Configuration menu
    Copy the full SHA
    118f43c View commit details
    Browse the repository at this point in the history

Commits on Jul 18, 2024

  1. (fix): subclass Reader to remove datasetkwargs

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    f742a0a View commit details
    Browse the repository at this point in the history

  2. (fix): add message tp errpr

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    ae68731 View commit details
    Browse the repository at this point in the history

  3. Update tests/test_io_elementwise.py 

    Co-authored-by: Isaac Virshup <ivirshup@gmail.com>
    @ilan-gold @ivirshup
    ilan-gold and ivirshup authored Jul 18, 2024
    Configuration menu
    Copy the full SHA
    f5e7760 View commit details
    Browse the repository at this point in the history

  4. (fix): correct self.callback check

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    96b13a3 View commit details
    Browse the repository at this point in the history

  5. (fix): erroneous diffs

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    9c68e36 View commit details
    Browse the repository at this point in the history

  6. (fix): extra read_elem dataset_kwargs

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    410aeda View commit details
    Browse the repository at this point in the history

  7. (fix): remove more dataset_kwargs nonsense

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    31a30c4 View commit details
    Browse the repository at this point in the history

  8. (chore): add docs

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    80fe8cb View commit details
    Browse the repository at this point in the history

  9. (fix): use block_info for dense

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    b314248 View commit details
    Browse the repository at this point in the history

  10. (fix): more erroneous diffs

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    02d4735 View commit details
    Browse the repository at this point in the history

  11. (fix): use context again

    @ilan-gold
    ilan-gold committed Jul 18, 2024
    Configuration menu
    Copy the full SHA
    6e5534a View commit details
    Browse the repository at this point in the history

Commits on Jul 22, 2024

  1. (fix): change size by dimension in tests

    @ilan-gold
    ilan-gold committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    d26cfe8 View commit details
    Browse the repository at this point in the history

  2. (refactor): clean up get_elem_name

    @ilan-gold
    ilan-gold committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    94e43a3 View commit details
    Browse the repository at this point in the history

  3. (fix): try new sphinx for error

    @ilan-gold
    ilan-gold committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    5160016 View commit details
    Browse the repository at this point in the history

  4. (fix): return type

    @ilan-gold
    ilan-gold committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    43da9a3 View commit details
    Browse the repository at this point in the history

  5. (fix): protocol for reading

    @ilan-gold
    ilan-gold committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    9735ced View commit details
    Browse the repository at this point in the history

  6. (fix): bring back ignored warning

    @ilan-gold
    ilan-gold committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    f1730c3 View commit details
    Browse the repository at this point in the history

  7. Fix docs

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    9861b56 View commit details
    Browse the repository at this point in the history

  8. almost fix typing

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    235096a View commit details
    Browse the repository at this point in the history

  9. add wrapper

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    dce9f07 View commit details
    Browse the repository at this point in the history

  10. move into type checking

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    2725ef2 View commit details
    Browse the repository at this point in the history

  11. (fix): small type fxes

    @ilan-gold
    ilan-gold committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    ffe89f0 View commit details
    Browse the repository at this point in the history

  12. Merge branch 'main' into ig/read_dask_elem

    @ilan-gold
    ilan-gold authored Jul 22, 2024
    Configuration menu
    Copy the full SHA
    6cb231e View commit details
    Browse the repository at this point in the history

  13. block info types

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    75a64fc View commit details
    Browse the repository at this point in the history

  14. simplify

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    3f734fe View commit details
    Browse the repository at this point in the history

  15. rename

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    c4c2356 View commit details
    Browse the repository at this point in the history

  16. simplify more

    @flying-sheep
    flying-sheep committed Jul 22, 2024
    Configuration menu
    Copy the full SHA
    cc67a9b View commit details
    Browse the repository at this point in the history