Update template to v0.3.0 (#124)

Co-authored-by: scverse-bot <None>
Co-authored-by: Philipp A <flying-sheep@web.de>

.cruft.json

@@ -1,7 +1,7 @@
 {
   "template": "https://github.com/scverse/cookiecutter-scverse",
-  "commit": "23a9eaaf101dc9b6d31976f32f7345e1b209b071",
-  "checkout": "v0.2.21",
+  "commit": "8e96abb5c3e2d5078c44713958da672711cf2a48",
+  "checkout": "v0.3.0",
   "context": {
     "cookiecutter": {
       "project_name": "scverse-tutorials",
@@ -16,6 +16,11 @@
         ".github/workflows/**.yaml",
         "docs/_templates/autosummary/**.rst"
       ],
+      "_render_devdocs": false,
+      "_jinja2_env_vars": {
+        "lstrip_blocks": true,
+        "trim_blocks": true
+      },
       "_template": "https://github.com/scverse/cookiecutter-scverse"
     }
   },

.github/workflows/release.yaml

@@ -1,30 +1,29 @@
 name: Release
 
 on:
-  push:
-    tags:
-      - "*.*.*"
+  release:
+    types: [published]
 
+# Use "trusted publishing", see https://docs.pypi.org/trusted-publishers/
 jobs:
   release:
-    name: Release
+    name: Upload release to PyPI
     runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/{{ cookiecutter.package_name }}
+    permissions:
+      id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
     steps:
-      - name: Checkout code
-        uses: actions/checkout@v3
-
-      - name: Set up Python 3.10
-        uses: actions/setup-python@v4
+      - uses: actions/checkout@v4
         with:
-          python-version: "3.10"
-
-      - name: Install hatch
-        run: pip install hatch
-
-      - name: Build project for distribution
-        run: hatch build
-
-      - name: Publish a Python distribution to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1
+          filter: blob:none
+          fetch-depth: 0
+      - uses: actions/setup-python@v4
         with:
-          password: ${{ secrets.PYPI_API_TOKEN }}
+          python-version: "3.x"
+          cache: "pip"
+      - run: pip install build
+      - run: python -m build
+      - name: Publish package distributions to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

docs/_static/css/custom.css

@@ -0,0 +1,4 @@
+/* Reduce the font size in data frames - See https://github.com/scverse/cookiecutter-scverse/issues/193 */
+div.cell_output table.dataframe {
+    font-size: 0.8em;
+}

docs/conf.py

@@ -107,18 +107,20 @@
 #
 html_theme = "sphinx_book_theme"
 html_static_path = ["_static"]
+html_css_files = ["css/custom.css"]
+
 html_title = project_name
 
 html_theme_options = {
     "repository_url": repository_url,
     "repository_branch": "main",
     "path_to_docs": "docs/",
+    "navigation_with_keys": False,
     "use_repository_button": True,
     "launch_buttons": {
         "binderhub_url": "https://mybinder.org",
         # "colab_url": "https://colab.research.google.com",
     },
-    "navigation_with_keys": False,
 }
 
 pygments_style = "default"
@@ -128,18 +130,3 @@
     # you can add an exception to this list.
     #     ("py:class", "igraph.Graph"),
 ]
-
-
-def setup(app):
-    """App setup hook."""
-    app.add_config_value(
-        "recommonmark_config",
-        {
-            "auto_toc_tree_section": "Contents",
-            "enable_auto_toc_tree": True,
-            "enable_math": True,
-            "enable_inline_math": False,
-            "enable_eval_rst": True,
-        },
-        True,
-    )