Update clinical sequecning accession file parsing function to handle … #1331
Workflow file for this run
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| name: CI | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| test: | |
| name: python=${{ matrix.python }} os=${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-20.04 | |
| python: | |
| - 3.8 | |
| - 3.9 | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Upgrade Python toolchain | |
| run: python3 -m pip install --upgrade pip setuptools wheel | |
| - name: Install deps | |
| run: | | |
| python3 -m pip install --editable "git+https://github.com/seattleflu/id3c@master#egg=id3c" | |
| python3 -m pip install --upgrade --editable ".[dev]" | |
| - name: Run pytest | |
| run: pytest -v |