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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,79 @@ | ||
| // app/assets/javascripts/copasi_simulation.js | ||
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| var copasi = null; | ||
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| function automaticChanged() { | ||
| var autoStepSize = document.getElementById("autoStepSize").checked; | ||
| document.getElementById("numPoints").disabled = autoStepSize; | ||
| } | ||
|
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| function loadIntoCOPASI() { | ||
| var info = copasi.loadModel(document.getElementById("cps").value); | ||
| document.getElementById("model_name").innerHTML = "none"; | ||
| if (info['status'] != "success") { | ||
| document.getElementById("simulation_error").innerHTML = "Error loading model: " + info['messages']; | ||
| document.getElementById('simulation_error').hidden = false; | ||
| } | ||
| document.getElementById("model_name").innerHTML = 'Model name: ' + info['model']['name']; | ||
| document.getElementById("copasi_version").innerHTML = 'Copasi version: ' + copasi.version; | ||
| document.getElementById('simulation_info').hidden = false; | ||
| } | ||
|
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| function simulate() { | ||
| if (copasi == null) { | ||
| alert('There is a problem to load Copasi simulator.'); | ||
| return; | ||
| } | ||
| loadIntoCOPASI(); | ||
| runSimulation(); | ||
| } | ||
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| function runSimulation() { | ||
| var autoStepSize = document.getElementById("autoStepSize").checked; | ||
| var timeStart = parseFloat(document.getElementById("startTime").value); | ||
| var timeEnd = parseFloat(document.getElementById("endTime").value); | ||
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| if (autoStepSize) { | ||
| var result = copasi.simulateYaml({ | ||
| "problem": { | ||
| "AutomaticStepSize": true, | ||
| "Duration": timeEnd, | ||
| "OutputStartTime": timeStart | ||
| } | ||
| }); | ||
| loadPlotFromResult(result); | ||
| return; | ||
| } | ||
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| var numPoints = parseInt(document.getElementById("numPoints").value); | ||
| var result = copasi.simulateEx(timeStart, timeEnd, numPoints); | ||
| loadPlotFromResult(result); | ||
| } | ||
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| function loadPlotFromResult(result) { | ||
| if (typeof result === 'string') { | ||
| result = JSON.parse(result); | ||
| } | ||
|
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| clearResults(); | ||
| document.getElementById("data").innerHTML = JSON.stringify(result); | ||
|
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| var data = []; | ||
| for (var i = 1; i < result.num_variables; i++) { | ||
| data.push({ | ||
| name: result.columns[i][0], | ||
| x: result.columns[0], | ||
| y: result.columns[i], | ||
| type: "scatter", | ||
| name: result.titles[i] | ||
| }); | ||
| } | ||
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| Plotly.newPlot('chart', data); | ||
| } | ||
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| function clearResults() { | ||
| document.getElementById("data").innerHTML = ""; | ||
| document.getElementById("chart").innerHTML = ""; | ||
| } | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| var ExtendedMetadataType = { | ||
|
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| addNewMarker: function(new_id, type) { | ||
| var isNested = (type === "ExtendedMetadata"); | ||
| $j("#nested-tab, #nested-tab").parent().toggleClass("active", isNested); | ||
| $j("#nested-metadata-table").toggleClass("active in", isNested); | ||
| $j("#top-level-tab, #top-level-tab").parent().toggleClass("active", !isNested); | ||
| $j("#top-level-metadata-table").toggleClass("active in", !isNested); | ||
|
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| var table = isNested ? $j("#nested-metadata-table") : $j("#top-level-metadata-table"); | ||
| table.find("tbody td#" + new_id).append(' <sup style="color:red; font-weight:bold; font-size: 12px">new</sup>'); | ||
| } | ||
| }; |
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