Run ETL Pipeline #15
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| name: Run ETL Pipeline | |
| on: | |
| schedule: | |
| - cron: '0 0 * * SUN' # runs at 00:00 AM UTC every Sunday | |
| workflow_dispatch: # manual trigger | |
| jobs: | |
| run-etl: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Run ETL in ec2 | |
| env: | |
| PRIVATE_KEY: ${{ secrets.AWS_ETL_EC2_PRIVATE_KEY }} | |
| HOSTNAME: ${{ secrets.AWS_HOST_NAME }} | |
| USER_NAME: ${{ secrets.AWS_USER_NAME }} | |
| run: | | |
| echo "$PRIVATE_KEY" > private_key.pem && chmod 600 private_key.pem | |
| ssh -o ServerAliveInterval=60 -o StrictHostKeyChecking=no -i "private_key.pem" ${USER_NAME}@${HOSTNAME} ' | |
| cd www/iit-backend/ && | |
| source venv/bin/activate && | |
| pip install -r requirements.txt && | |
| set -o allexport; source .env; set +o allexport && | |
| python3 -m Pathogens.Arbo.Etl.arbo_etl_main | |
| ' |