Paired scATAC-seq and scRNA-seq Analysis
ArchR now supports paired scATAC-seq and scRNA-seq Analysis!
See updates with importFeatureMatrix, addGeneExpressionMatrix, addIterativeLSI, addCombinedDims
For a brief tutorial of these features : https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html
Trajectory Analysis
ArchR now directly supports both monocle3 and Slingshot based trajectory analysis!
See updates with getMonocleTrajectories, addMonocleTrajectory, addSlingShotTrajectories
For a brief tutorial of these features : https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Trajectory.html
Additionally ArchR now enables export of a peak matrix that is compatible with STREAM!
See updates with exportPeakMatrixForSTREAM