Windows #2886
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name: Windows | |
on: | |
push: | |
pull_request: | |
schedule: | |
# Run at the end of every day | |
- cron: "0 0 * * *" | |
jobs: | |
win_build: | |
# Scheduled runs only on the origin org | |
if: (github.event_name == 'schedule' && github.repository_owner == 'sgkit-dev') || (github.event_name != 'schedule') | |
runs-on: windows-latest | |
strategy: | |
matrix: | |
python-version: ["3.9"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Miniconda with Python version ${{ matrix.python-version }} | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
channels: conda-forge,numba | |
miniconda-version: "latest" | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
# activate conda | |
shell: bash -l {0} | |
# conda can't install all dev tools, so we need to split it between conda and pip | |
run: | | |
conda install --file requirements.txt msprime | |
pip install -r requirements-dev.txt | |
- name: Test with pytest | |
# activate conda | |
shell: bash -l {0} | |
# To avoid: 'UserWarning: KMeans is known to have a memory leak on Windows with MKL, when there are less chunks than available threads. You can avoid it by setting the environment variable OMP_NUM_THREADS=1' | |
env: | |
OMP_NUM_THREADS: 1 | |
run: | | |
pytest -v |