🦀 A tool for quality overview of long-read sequencing data
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
git clone https://github.com/sharkLoc/nemo.git
cd nemo
cargo b --release
# mv target/release/nemo to anywhere you want
cargo install --git https://github.com/sharkLoc/nemo.git
nemo -- A tool for quality overview of long-read sequencing data
Version: 0.1.0
Authors: sharkLoc <mmtinfo@163.com>
Source code: https://github.com/sharkLoc/nemo.git
Usage: nemo [OPTIONS] [FILE]
Arguments:
[FILE] Input long reads sequence data, or read data from stdin
Options:
-r, --html <FILE> Specify the output HTML report file name [default: report.html]
-o, --json <FILE> Specify the output json file name [default: report.json]
--log <FILE> If file name specified, write log message to this file, or write to stderr
--compress-level <INT> Set compression level 1 (compress faster) - 9 (compress better) for gzip/bzip2/xz output file, just work with option -o/--json [default: 6]
-v, --verbosity... Control verbosity of logging, [-v: Error, -vv: Warn, -vvv: Info, -vvvv: Debug, -vvvvv: Trace, defalut: Debug]
-q, --quiet Be quiet and do not show any extra information
-h, --help prints help information
-V, --version prints version information
Use "nemo --help" for more information