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GUI: plot z-scores using divergent colour scheme #841

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shawnlaffan opened this issue Dec 10, 2022 · 0 comments · Fixed by #843
Closed

GUI: plot z-scores using divergent colour scheme #841

shawnlaffan opened this issue Dec 10, 2022 · 0 comments · Fixed by #843
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@shawnlaffan
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GUI
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Release_4.1

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@shawnlaffan
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The NRI/NTI indices and randomisation z-scores should be plotted using a divergent colour scheme by default.

The more general case is under #820
@shawnlaffan shawnlaffan added this to the Release_4.1 milestone Dec 10, 2022
@shawnlaffan shawnlaffan self-assigned this Dec 10, 2022
shawnlaffan added a commit that referenced this issue Dec 11, 2022
@shawnlaffan
Add capacity to colour grid cells as z-scores
74dca7c 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 11, 2022
@shawnlaffan
Colour z-score indices using a divergent colour scheme
4f819a2 
Includes updates to the respective legends.

The index detection needs to be refactored.

Updates #841
shawnlaffan added a commit that referenced this issue Dec 11, 2022
@shawnlaffan
Spatial tab: minor refactor of branch colouring
e865724 
Related to #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
GUI: Refactor zscore index detection to Tabs::Tab
6a3c8c9 
This will enable easier use of an Indices object.

Updates #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
GUI: PHYLO_NET_VPD is a zscore
e452a6a 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
Avoid some undef warnings
a71a23e 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
Indices: add metadata for zscore indices
3db4c67 
Includes tests

Updates #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
GUI: use correct reference
35f0227 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
Indices: add methods to determine if index is scalar or list
9bd1ada 
Related to #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
GUI: use Indices object to determine if an index is a z-score
00ca005 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
GUI: avoid longish ternary in z-score colour assignment
6af1444 
Updates #841
@shawnlaffan shawnlaffan mentioned this issue Dec 12, 2022
Merged
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
flag more indices as z-scores
4b13d53 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 12, 2022
@shawnlaffan
GUI: plot list indices that are z-scores
669b4ca 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI spatial tab: Ensure dendrogram legend is displayed in correct loc…
1ca5da1 
…ation

The legend was often not displaying until a pane resize.

Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI spatial tab: hide dendrogram legend when not needed
aa88775 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
Add capacity to colour grid cells as z-scores
cfa445f 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
Colour z-score indices using a divergent colour scheme
b7474b0 
Includes updates to the respective legends.

The index detection needs to be refactored.

Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
Spatial tab: minor refactor of branch colouring
bb8b203 
Related to #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI: Refactor zscore index detection to Tabs::Tab
ae07694 
This will enable easier use of an Indices object.

Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI: PHYLO_NET_VPD is a zscore
e19f6e1 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
Avoid some undef warnings
ac8d3cd 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
Indices: add metadata for zscore indices
d470b12 
Includes tests

Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI: use correct reference
6b1b759 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
Indices: add methods to determine if index is scalar or list
bd71490 
Related to #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI: use Indices object to determine if an index is a z-score
6c627dd 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI: avoid longish ternary in z-score colour assignment
a3e9ba3 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
flag more indices as z-scores
fb4f555 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI: plot list indices that are z-scores
b60ac06 
Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI spatial tab: Ensure dendrogram legend is displayed in correct loc…
5831ccb 
…ation

The legend was often not displaying until a pane resize.

Updates #841
shawnlaffan added a commit that referenced this issue Dec 13, 2022
@shawnlaffan
GUI spatial tab: hide dendrogram legend when not needed
b883af1 
Updates #841
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Issue 841 colour zscores shawnlaffan/biodiverse
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@shawnlaffan