gtdb-taxdump v0.5.0 r80-r220

Update with R220.

• https://forum.gtdb.ecogenomic.org/t/announcing-gtdb-r09-rs220/595
• https://gtdb.ecogenomic.org/stats/r220

gtdb-taxdump v0.4.0 r80-r214.1

Now, duplicated names with different ranks are allowed, by generating TaxIds from the hash value of rank+taxon_name (in lower case) . shenwei356/taxonkit#92

Note for the taxid-changelog file:

We only check and eliminate taxid collision within a single version of taxonomy data. Therefore, if you create taxid-changelog with "taxid-changelog", different taxons in multiple versions might have the same TaxIds and some change events might be wrong.

A single version of taxonomic data created by "taxonkit create-taxdump" has no problem, it's just the changelog might not be perfect.

gtdb-taxdump v0.3.1 r80-r214.1

Changes

This is a minor update to R08-RS214 that corrects the classification of GB_GCA_902406375.1 in a few GTDB data files. GB_GCA_902406375.1 was incorrectly classified as Collinsella sp905215505 instead of Collinsella sp002232035.

https://forum.gtdb.ecogenomic.org/t/announcing-gtdb-r08-rs214-1/479

gtdb-taxdump v0.3.0 r80-r214

Changes

Update with GTDB R214

gtdb-taxdump v0.2.0 r80-r207

Changes

• taxonkit create-taxdump stores TaxIds in int32 following BLAST and DIAMOND, rather than uint32 in previous versions.

gtdb-taxdump v0.1.2 r80-r207

Changes

• fix delnodes.dmp and merged.dmp #2. But it's not perfect; check this.

gtdb-taxdump v0.1.1 r80-r207

Changes

• Better handle of taxa with same names in old versions.
• The names.dmp, nodes.dmp, and taxid.map files are not changed in R207 and R202.

gtdb-taxdump v0.1.0

First release.