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Add option to translate command to skip errors while translating #458

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merged 2 commits into from
Apr 26, 2024

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khalilchatoo
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@khalilchatoo khalilchatoo commented Apr 26, 2024

When translating a large fastq file, I ran into an issue with my data where one of my sequences was incomplete. When using seqkit out of the box, I'd receive an error and processing would stop.

For my use-case, skipping the error and writing an empty sequence was sufficient. I'm sure others would benefit from this functionality so I made this change. I've tested it with my data.

@khalilchatoo khalilchatoo changed the title Skip errors on translate Add option to translate command to skip errors while translating Apr 26, 2024
@shenwei356 shenwei356 merged commit 9530bc8 into shenwei356:master Apr 26, 2024
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Thanks @khalilchatoo

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3 participants