SeqKit v2.5.0

Changes

• SeqKit v2.5.0 - 2023-07-16
  • new command seqkit merge-slides: merge sliding windows generated from seqkit sliding. #390
  • seqkit stats:
    • added a new flag -N/--N for appending other N50-like stats as new columns. #393
    • added a progress bar for > 1 input files.
    • write the result of each file immediately (no output buffer) when using -T/--tabular.
  • seqkit translate:
    • add options -s/--out-subseqs and -m/--min-len to write ORFs longer than x amino acids as individual records. #389
  • seqkit sum:
    • do not remove possible '*' by default and delete confusing warnings. Thanks to @photocyte. #399
    • added a progress bar for > 1 input files.
  • seqkit pair:
    • remove the restriction of requiring FASTQ format, i.e., FASTA files are also supported.
  • seqkit seq:
    • update help messages. #387
  • seqkit fxtab:
    • faster alphabet computation (-a/--alphabet) with a new data structure. Thanks to @elliotwutingfeng #388
  • seqkit subseq:
    • accept reverse coordinates in BED/GTF. #392