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v0.16.0
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@shenwei356
shenwei356 committed Mar 6, 2024
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45 changes: 31 additions & 14 deletions download/index.html
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Expand Up @@ -661,10 +661,19 @@ <h1 id="download">Download<a class="headerlink" href="#download" title="Permanen
in <a href="https://github.com/shenwei356/taxonkit/releases">release</a> page.</p>
<h2 id="current-version">Current Version<a class="headerlink" href="#current-version" title="Permanent link">Link</a></h2>
<ul>
<li><a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.15.1">TaxonKit v0.15.1</a>
<a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.15.1"><img alt="Github Releases (by Release)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.15.1/total.svg" /></a><ul>
<li><code>taxonkit name2taxid</code>:<ul>
<li>remove the restriction of name types. <a href="https://github.com/shenwei356/taxonkit/issues/87">#87</a></li>
<li><a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.16.0">TaxonKit v0.16.0</a>
<a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.16.0"><img alt="Github Releases (by Release)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.16.0/total.svg" /></a><ul>
<li><code>taxonkit create-taxdump</code>:<ul>
<li>TaxIds are generated from the hash value of "rank+taxon_name", this allowed duplicated names with different ranks (common in GTDB). <a href="https://github.com/shenwei356/taxonkit/issues/92">#92</a>.</li>
</ul>
</li>
<li><code>taxonkit taxid-changelog/create-taxdump</code>:<ul>
<li>Add notes about the possible error records in taxid-changelog built from taxonomic data created by <code>create-taxdump</code>. <a href="https://github.com/shenwei356/taxonkit/issues/91">#91</a></li>
<li>Dont't worry, a single version of taxonomic data created by <code>taxonkit create-taxdump</code> has no problem, it's just the changelog might not be perfect.</li>
</ul>
</li>
<li><code>taxonkit lca</code>:<ul>
<li>new flag <code>-K/--keep-invalid</code>: print the query even if no single valid taxid left. <a href="https://github.com/shenwei356/taxonkit/issues/89">#89</a></li>
</ul>
</li>
</ul>
Expand Down Expand Up @@ -694,32 +703,32 @@ <h3 id="links">Links<a class="headerlink" href="#links" title="Permanent link">L
<tr>
<td style="text-align: left;">Linux</td>
<td style="text-align: left;"><strong>64-bit</strong></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_linux_amd64.tar.gz"><strong>taxonkit_linux_amd64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_linux_amd64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_linux_amd64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_amd64.tar.gz.svg?maxAge=3600" /></a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_linux_amd64.tar.gz"><strong>taxonkit_linux_amd64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_linux_amd64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_linux_amd64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_amd64.tar.gz.svg?maxAge=3600" /></a></td>
</tr>
<tr>
<td style="text-align: left;">Linux</td>
<td style="text-align: left;"><strong>arm64</strong></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_linux_arm64.tar.gz"><strong>taxonkit_linux_arm64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_linux_arm64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_linux_arm64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_arm64.tar.gz.svg?maxAge=3600" /></a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_linux_arm64.tar.gz"><strong>taxonkit_linux_arm64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_linux_arm64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_linux_arm64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_linux_arm64.tar.gz.svg?maxAge=3600" /></a></td>
</tr>
<tr>
<td style="text-align: left;">macOS</td>
<td style="text-align: left;"><strong>64-bit</strong></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_darwin_amd64.tar.gz"><strong>taxonkit_darwin_amd64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_darwin_amd64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_darwin_amd64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_amd64.tar.gz.svg?maxAge=3600" /></a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_darwin_amd64.tar.gz"><strong>taxonkit_darwin_amd64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_darwin_amd64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_darwin_amd64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_amd64.tar.gz.svg?maxAge=3600" /></a></td>
</tr>
<tr>
<td style="text-align: left;">macOS</td>
<td style="text-align: left;"><strong>arm64</strong></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_darwin_arm64.tar.gz"><strong>taxonkit_darwin_arm64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_darwin_arm64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_darwin_arm64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_arm64.tar.gz.svg?maxAge=3600" /></a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_darwin_arm64.tar.gz"><strong>taxonkit_darwin_arm64.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_darwin_arm64.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_darwin_arm64.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_darwin_arm64.tar.gz.svg?maxAge=3600" /></a></td>
</tr>
<tr>
<td style="text-align: left;">Windows</td>
<td style="text-align: left;"><strong>64-bit</strong></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_windows_amd64.exe.tar.gz"><strong>taxonkit_windows_amd64.exe.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_windows_amd64.exe.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.15.1/taxonkit_windows_amd64.exe.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_windows_amd64.exe.tar.gz.svg?maxAge=3600" /></a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_windows_amd64.exe.tar.gz"><strong>taxonkit_windows_amd64.exe.tar.gz</strong></a>,<br/> <a href="http://app.shenwei.me/data/taxonkit/taxonkit_windows_amd64.exe.tar.gz">中国镜像</a></td>
<td style="text-align: left;"><a href="https://github.com/shenwei356/taxonkit/releases/download/v0.16.0/taxonkit_windows_amd64.exe.tar.gz"><img alt="Github Releases (by Asset)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/latest/taxonkit_windows_amd64.exe.tar.gz.svg?maxAge=3600" /></a></td>
</tr>
</tbody>
</table>
Expand Down Expand Up @@ -849,6 +858,14 @@ <h2 id="dataset">Dataset<a class="headerlink" href="#dataset" title="Permanent l
<p><strong>Update dataset</strong>: Simply re-download the taxdump files, uncompress and override old ones.</p>
<h2 id="release-history">Release history<a class="headerlink" href="#release-history" title="Permanent link">Link</a></h2>
<ul>
<li><a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.15.1">TaxonKit v0.15.1</a>
<a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.15.1"><img alt="Github Releases (by Release)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.15.1/total.svg" /></a><ul>
<li><code>taxonkit name2taxid</code>:<ul>
<li>remove the restriction of name types. <a href="https://github.com/shenwei356/taxonkit/issues/87">#87</a></li>
</ul>
</li>
</ul>
</li>
<li><a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.15.0">TaxonKit v0.15.0</a>
<a href="https://github.com/shenwei356/taxonkit/releases/tag/v0.15.0"><img alt="Github Releases (by Release)" src="https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.15.0/total.svg" /></a><ul>
<li><code>taxonkit reformat</code>:<ul>
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16 changes: 8 additions & 8 deletions sitemap.xml
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<url>
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<lastmod>2023-11-27</lastmod>
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<loc>https://bioinf.shenwei.me/taxonkit/bioinf/</loc>
<lastmod>2023-11-27</lastmod>
<lastmod>2024-03-06</lastmod>
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<lastmod>2023-11-27</lastmod>
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<lastmod>2023-11-27</lastmod>
<lastmod>2024-03-06</lastmod>
<changefreq>daily</changefreq>
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<loc>https://bioinf.shenwei.me/taxonkit/download/</loc>
<lastmod>2023-11-27</lastmod>
<lastmod>2024-03-06</lastmod>
<changefreq>daily</changefreq>
</url>
<url>
<loc>https://bioinf.shenwei.me/taxonkit/tutorial/</loc>
<lastmod>2023-11-27</lastmod>
<lastmod>2024-03-06</lastmod>
<changefreq>daily</changefreq>
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<lastmod>2023-11-27</lastmod>
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<changefreq>daily</changefreq>
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<url>
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<lastmod>2023-11-27</lastmod>
<lastmod>2024-03-06</lastmod>
<changefreq>daily</changefreq>
</url>
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