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update download info
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shenwei356 committed Oct 5, 2018
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2 changes: 1 addition & 1 deletion HISTORY.md
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- `taxonkit reformat`: detects lineages containing unofficial taxon name and won't show panic message.
- `taxonkit name2taxid`: supports synonyms names. [#9](https://github.com/shenwei356/taxonkit/commit/d4fac1c1138a571957f52eb431ff0d85c03852a8)
- add global flag: `--line-buffered` to disable output buffer. [#11](https://github.com/shenwei356/taxonkit/issues/11)
- replace global flags `--names-file` and `--nodes-file` with `--data-dir`, also supports environment variable `TAXONKIT_DB`. [#17](https://github.com/shenwei356/taxonkit/issues/17)
- replace global flags `--names-file` and `--nodes-file` with `--data-dir`, also support environment variable `TAXONKIT_DB`. [#17](https://github.com/shenwei356/taxonkit/issues/17)
- [TaxonKit v0.2.4](https://github.com/shenwei356/taxonkit/releases/tag/v0.2.4)
[![Github Releases (by Release)](https://img.shields.io/github/downloads/shenwei356/taxonkit/v0.2.4/total.svg)](https://github.com/shenwei356/taxonkit/releases/tag/v0.2.4)
- `taxonkit reformat`:
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16 changes: 9 additions & 7 deletions README.md
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Expand Up @@ -35,7 +35,7 @@ Go to [Download Page](http://bioinf.shenwei.me/taxonkit/download) for more downl
executable binary files **for most popular operating systems** are freely available
in [release](https://github.com/shenwei356/taxonkit/releases) page.

#### Method 1: Download binaries
#### Method 1: Download binaries (latest stable/dev version)

Just [download](https://github.com/shenwei356/taxonkit/releases) compressed
executable file of your operating system,
Expand All @@ -47,19 +47,21 @@ And then:

sudo cp taxonkit /usr/local/bin/

1. Or add the current directory of the executable file to environment variable
`PATH`:
1. Or copy to anywhere in the environment variable `PATH`:

echo export PATH=\$PATH:\"$(pwd)\" >> ~/.bashrc
source ~/.bashrc
mkdir -p $HOME/bin/; cp taxonkit $HOME/bin/

1. **For windows**, just copy `taxonkit.exe` to `C:\WINDOWS\system32`.

#### Method 2: Install via conda [![Install-with-conda](https://anaconda.org/bioconda/taxonkit/badges/installer/conda.svg)](http://bioinf.shenwei.me/taxonkit/download/) [![Anaconda Cloud](https://anaconda.org/bioconda/taxonkit/badges/version.svg)](https://anaconda.org/bioconda/taxonkit) [![downloads](https://anaconda.org/bioconda/taxonkit/badges/downloads.svg)](https://anaconda.org/bioconda/taxonkit)
#### Method 2: Install via conda (latest stable version) [![Install-with-conda](https://anaconda.org/bioconda/taxonkit/badges/installer/conda.svg)](http://bioinf.shenwei.me/taxonkit/download/) [![Anaconda Cloud](https://anaconda.org/bioconda/taxonkit/badges/version.svg)](https://anaconda.org/bioconda/taxonkit) [![downloads](https://anaconda.org/bioconda/taxonkit/badges/downloads.svg)](https://anaconda.org/bioconda/taxonkit)

conda install -c bioconda taxonkit

#### Method 3: For Go developer
#### Method 3: Install via homebrew (latest stable version)

brew install brewsci/bio/taxonkit

#### Method 4: For Go developer (latest stable/dev version)

go get -u github.com/shenwei356/taxonkit/taxonkit

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16 changes: 9 additions & 7 deletions doc/docs/download.md
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Expand Up @@ -43,7 +43,7 @@ Windows|**64-bit**|[**taxonkit_windows_amd64.exe.tar.gz**](https://github.com/sh
executable binary files **for most popular operating systems** are freely available
in [release](https://github.com/shenwei356/taxonkit/releases) page.

#### Method 1: Download binaries
#### Method 1: Download binaries (latest stable/dev version)

Just [download](https://github.com/shenwei356/taxonkit/releases) compressed
executable file of your operating system,
Expand All @@ -55,19 +55,21 @@ And then:

sudo cp taxonkit /usr/local/bin/

1. Or add the current directory of the executable file to environment variable
`PATH`:
1. Or copy to anywhere in the environment variable `PATH`:

echo export PATH=\$PATH:\"$(pwd)\" >> ~/.bashrc
source ~/.bashrc
mkdir -p $HOME/bin/; cp taxonkit $HOME/bin/

1. **For windows**, just copy `taxonkit.exe` to `C:\WINDOWS\system32`.

#### Method 2: Install via conda [![Install-with-conda](https://anaconda.org/bioconda/taxonkit/badges/installer/conda.svg)](http://bioinf.shenwei.me/taxonkit/download/) [![Anaconda Cloud](https://anaconda.org/bioconda/taxonkit/badges/version.svg)](https://anaconda.org/bioconda/taxonkit) [![downloads](https://anaconda.org/bioconda/taxonkit/badges/downloads.svg)](https://anaconda.org/bioconda/taxonkit)
#### Method 2: Install via conda (latest stable version) [![Install-with-conda](https://anaconda.org/bioconda/taxonkit/badges/installer/conda.svg)](http://bioinf.shenwei.me/taxonkit/download/) [![Anaconda Cloud](https://anaconda.org/bioconda/taxonkit/badges/version.svg)](https://anaconda.org/bioconda/taxonkit) [![downloads](https://anaconda.org/bioconda/taxonkit/badges/downloads.svg)](https://anaconda.org/bioconda/taxonkit)

conda install -c bioconda taxonkit

#### Method 3: For Go developer
#### Method 3: Install via homebrew (latest stable version)

brew install brewsci/bio/taxonkit

#### Method 4: For Go developer (latest stable/dev version)

go get -u github.com/shenwei356/taxonkit/taxonkit

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