Code for our paper "GCTI-SN: Geometry-inspired chemical and tissue invariant stain normalization of microscopic medical images."
Dataset for this paper can be found here
[1] Anubha Gupta, Rahul Duggal, Shiv Gehlot, Ritu Gupta, Anvit Mangal, Lalit Kumar, Nisarg Thakkar, and Devprakash Satpathy, "GCTI-SN: Geometry-Inspired Chemical and Tissue Invariant Stain Normalization of Microscopic Medical Images," Medical Image Analysis, Volume 65, 101788, 2020.
[2] A method for normalizing histology slides for quantitative analysis, M Macenko, M Niethammer, JS Marron, D Borland, JT Woosley, G Xiaojun, C Schmitt, NE Thomas, IEEE ISBI, 2009. dx.doi.org/10.1109/ISBI.2009.5193250
- Run demo.m. It takes a reference image and a query image.
- Results on ALL image: