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@sib-swiss

SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 972 184

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 77 37

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 58 25

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 54 15

  5. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 42 12

  6. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 35 15

Repositories

Showing 10 of 119 repositories
  • containers-snakemake-training Public Forked from sib-swiss/containers-introduction-training

    Course website "Introduction to Containers and Snakemake for Reproducible Research"

    sib-swiss/containers-snakemake-training’s past year of commit activity
    Dockerfile 4 CC-BY-4.0 14 0 0 Updated Oct 22, 2024
  • sparql-editor Public

    💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

    sib-swiss/sparql-editor’s past year of commit activity
    TypeScript 3 MIT 0 5 0 Updated Oct 22, 2024
  • sparql-llm Public

    🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm’s past year of commit activity
    Jupyter Notebook 6 MIT 0 0 0 Updated Oct 21, 2024
  • containers-introduction-training Public

    Course website "Docker and Singularity for reproducible research: getting started with containers"

    sib-swiss/containers-introduction-training’s past year of commit activity
    HTML 27 CC-BY-4.0 14 1 0 Updated Oct 21, 2024
  • epinorm Public

    Scripts for processing of disease outbreak records as part of the MOOD project.

    sib-swiss/epinorm’s past year of commit activity
    Python 2 0 1 0 Updated Oct 21, 2024
  • immunology-in-bioinformatics-training Public Forked from sib-swiss/gh-pages-training
    sib-swiss/immunology-in-bioinformatics-training’s past year of commit activity
    HTML 1 CC-BY-4.0 3 0 0 Updated Oct 21, 2024
  • training-collection Public

    Collection of bioinformatics training materials

    sib-swiss/training-collection’s past year of commit activity
    Python 972 184 1 0 Updated Oct 20, 2024
  • single-cell-python-training Public
    sib-swiss/single-cell-python-training’s past year of commit activity
    HTML 1 CC-BY-4.0 0 0 0 Updated Oct 20, 2024
  • spatial-transcriptomics-training Public
    sib-swiss/spatial-transcriptomics-training’s past year of commit activity
    R 2 CC-BY-4.0 1 1 0 Updated Oct 20, 2024
  • glittr-stats Public

    General statistics of Glittr.org. Comes with the manuscript.

    sib-swiss/glittr-stats’s past year of commit activity
    PostScript 0 0 0 0 Updated Oct 20, 2024
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