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openSNP data

Task: Get OpenSNP data and process it into small files.

Data: openSNP data from the crowdAI challenge.

The main file is opensnp-data.Rmd that will download the big openSNP file and chop it up into small pieces.

After knitting opensnp-data.Rmd, the folder data/out/* will contain three files that are ready to be copied and used:

  • genotyping_data_subset_train.bim: genotype data description
  • genotyping_data_subset_train.raw: genotype data
  • training_set_details.txt: phenotype data