mini-docker

Rocker (R + Docker)

This folder contains

• Docker container
• the R script for associations between a (tiny) subset of genetic markers and height.

Docker

Inspiration through blogpost by Colin Fay

How to run the docker file

1. Install Docker
2. Create or modify Dockerfile
3. Create a folder mkdir results
4. docker build --build-arg WHEN=2019-01-06 -t analysis .
5. docker run -v ~/mini-docker/results:/home/analysis/results analysis

This means that within docker, the results are stored in /home/analysis/results and on my computer under ~/mini-docker/results

Files

• Dockerfile
• functions.R: contains functions for data prep.
• A_dataprep.R: should be ran first, prepares the data for B_fit.R, .RData as output.
• B_fit.R: fits a simple and a multiple linear regression, .RData as output.
• data/: https://github.com/sinarueeger/create-data-workflow-example

No rmarkdown here, since the docker has no pandoc.

Output

• results