[r] Plumb old-style contexts to new libtiledbsoma contexts (#3252)
#1723
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| name: TileDB-SOMA Python CI (Full) | |
| # This workflow calls ./python-ci-single.yml on the full {os} x {python version} | |
| # matrix. Since that's CI-resource-intensive, it runs only for main branch and | |
| # releases. | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - 'release-*' | |
| release: | |
| types: [published] | |
| # You can also invoke this workflow manually from | |
| # https://github.com/single-cell-data/TileDB-SOMA/actions/workflows/python-ci-full.yml | |
| # to test a working branch on the full matrix. | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # TODO: decide on Windows CI coverage | |
| os: [ubuntu-latest, macos-latest] | |
| # os: [ubuntu-latest, macos-latest, windows-2019] | |
| # TODO: add 3.12 | |
| # https://github.com/single-cell-data/TileDB-SOMA/issues/1849 | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| include: | |
| - runs-on: ubuntu-latest | |
| cc: gcc-11 | |
| cxx: g++-11 | |
| - runs-on: macos-latest | |
| cc: clang | |
| cxx: clang++ | |
| uses: ./.github/workflows/python-ci-single.yml | |
| with: | |
| os: ${{ matrix.os }} | |
| python_version: ${{ matrix.python-version }} | |
| cc: ${{ matrix.cc }} | |
| cxx: ${{ matrix.cxx }} | |
| report_codecov: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' }} | |
| run_lint: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' }} | |
| secrets: inherit |