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[r] TileDB-SOMA 1.14.1 #3015

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[r] TileDB-SOMA 1.14.1 #3015

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6befccd
[r] 1.14 version for `release-1.14` branch
johnkerl Sep 17, 2024
7323987
[r] 1.14 version for `release-1.14` branch (#3010)
johnkerl Sep 17, 2024
fc68247
[python] Fix deprecation warnings (#3013)
johnkerl Sep 18, 2024
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2 changes: 1 addition & 1 deletion apis/python/src/tiledbsoma/options/_soma_tiledb_context.py
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@


def _warn_ctx_deprecation() -> None:
assert_version_before(1, 14)
assert_version_before(1, 15)
warnings.warn(
"tiledb_ctx is now deprecated for removal in 1.15. "
"Use tiledb_config instead by passing "
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8 changes: 4 additions & 4 deletions apis/python/src/tiledbsoma/options/_tiledb_create_write_options.py
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Expand Up @@ -194,7 +194,7 @@ def cell_tile_orders(self) -> Tuple[Optional[str], Optional[str]]:

def offsets_filters_tiledb(self) -> Tuple[tiledb.Filter, ...]:
"""Constructs the real TileDB Filters to use for offsets."""
assert_version_before(1, 14)
assert_version_before(1, 15)
warnings.warn(
"`offsets_filters_tiledb` is now deprecated for removal in 1.15 "
"as we no longer support returning tiledb.Filter. "
Expand All @@ -206,7 +206,7 @@ def offsets_filters_tiledb(self) -> Tuple[tiledb.Filter, ...]:

def validity_filters_tiledb(self) -> Optional[Tuple[tiledb.Filter, ...]]:
"""Constructs the real TileDB Filters to use for the validity map."""
assert_version_before(1, 14)
assert_version_before(1, 15)
warnings.warn(
"`validity_filters_tiledb` is now deprecated for removal in 1.15 "
"as we no longer support returning tiledb.Filter. "
Expand All @@ -221,7 +221,7 @@ def dim_filters_tiledb(
self, dim: str, default: Sequence[_FilterSpec] = ()
) -> Tuple[tiledb.Filter, ...]:
"""Constructs the real TileDB Filters to use for the named dimension."""
assert_version_before(1, 14)
assert_version_before(1, 15)
warnings.warn(
"`dim_filters_tiledb` is now deprecated for removal in 1.15 "
"as we no longer support returning tiledb.Filter. "
Expand All @@ -242,7 +242,7 @@ def attr_filters_tiledb(
self, name: str, default: Sequence[_FilterSpec] = ()
) -> Tuple[tiledb.Filter, ...]:
"""Constructs the real TileDB Filters to use for the named attribute."""
assert_version_before(1, 14)
assert_version_before(1, 15)
warnings.warn(
"`attr_filters_tiledb` is now deprecated for removal in 1.15 "
"as we no longer support returning tiledb.Filter. "
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2 changes: 1 addition & 1 deletion apis/r/DESCRIPTION
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Expand Up @@ -6,7 +6,7 @@ Description: Interface for working with 'TileDB'-based Stack of Matrices,
like those commonly used for single cell data analysis. It is documented at
<https://github.com/single-cell-data>; a formal specification available is at
<https://github.com/single-cell-data/SOMA/blob/main/abstract_specification.md>.
Version: 1.13.99.10
Version: 1.14.0
Authors@R: c(
person(given = "Aaron", family = "Wolen",
role = c("cre", "aut"), email = "aaron@tiledb.com",
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8 changes: 7 additions & 1 deletion apis/r/NEWS.md
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@@ -1,4 +1,4 @@
# Unreleased
# tiledbsoma 1.14.0

## Changes

Expand All @@ -11,6 +11,12 @@
* SOMA context objects are used throughout SOMA object creation
* Add value-checking for `axis` parameter when initializing blockwise reads

# tiledbsoma 1.13.1

## Changes

* Includes a fix for appended enumerations [#2903](https://github.com/single-cell-data/TileDB-SOMA/pull/2903)

# tiledbsoma 1.13.0

## Changes
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