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[r] Handle empty matrices when creating SOMA from Seurat #990

Merged
merged 5 commits into from
Feb 23, 2023
Merged

[r] Handle empty matrices when creating SOMA from Seurat #990

merged 5 commits into from
Feb 23, 2023

Commits on Feb 23, 2023

  1. Handle empty matrices when creating SOMA from Seurat 

    Seurat allows empty matrices for counts and scale.data
Empty matrices are defined as 0x0 or 1x1 with a value of NA
Use SeuratObject::IsMatrixEmpty to determine empty matrices
Skip writing empty matrices

fixes TileDB-Inc/tiledbsc#92
    @mojaveazure
    mojaveazure committed Feb 23, 2023
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  2. Update tests

    @mojaveazure
    mojaveazure committed Feb 23, 2023
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  3. Remove commented-out block

    @mojaveazure
    mojaveazure authored Feb 23, 2023
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  4. Bump develop version 

    Update changelog
    @mojaveazure
    mojaveazure committed Feb 23, 2023
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  5. Merge branch 'ph/fix/seurat-empty-matrices' of github.com:single-cell… 

    …-data/TileDB-SOMA into ph/fix/seurat-empty-matrices
    @mojaveazure
    mojaveazure committed Feb 23, 2023
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