Skip to content

sjeohp-zz/kmer-frequency

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

17 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Requirements:
clang
make

To build:
make

To run:
./run <filename> <k>

<filename> 	is a file of DNA sequence reads in FASTQ format.
<k> 		is the length of k-mers to be counted.

K-mer search runs in O(n) time, where n is the size of the file.
Sorting is done in-place, in O(nlogn) time.

Tested on files up to 4.5gb in size.

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published