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Requirements: clang make To build: make To run: ./run <filename> <k> <filename> is a file of DNA sequence reads in FASTQ format. <k> is the length of k-mers to be counted. K-mer search runs in O(n) time, where n is the size of the file. Sorting is done in-place, in O(nlogn) time. Tested on files up to 4.5gb in size.
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