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bam2sff

forked from lvaruzza/bam2sff

Changes:

  • found a small compiling issue with Linux GCC
  • fixed a major error in bam2sff.cpp for flow index = flow_order2.length()

BAM to SFF and SFF to BAM converters.

Code extracted from https://github.com/iontorrent/TS, adpated to compile as stand alone tools.

Tested on Ubuntu 14.10 64bit

Installation requirements:

  • cmake
  • zlib
  • TODO

To compile run:

make_all.sh

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  • C++ 63.3%
  • C 36.5%
  • Other 0.2%