This is a repository of all of the scripts implemented for my master thesis, excluding R-package implementations.
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Metadata: Contains all of the metadata files of the downloaded Hi-C and RNA-seq data
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DataAggregation: Contains all helper scripts used for downloading the data, applying fan-c etc.
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InsulationScoreScripts: Contains all scripts used to decide on how to apply the Insulation Scores.
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DirectionalityIndexScripts: Contains all scripts used to decide on how to apply the Directionality Indices.
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Training: Contains all produced classifiers and the training scripts
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AcrossCTComparisonMSIMI: Contains all scripts for the comparison when mixing MSI and MI values from a cell type to predict in another cell type.