Skip to content

Commit

Permalink
also replace guppy binary with 1.1.17
Browse files Browse the repository at this point in the history
  • Loading branch information
sjanssen2 committed Nov 25, 2024
1 parent 1fe2aab commit 96d7438
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions .github/workflows/sepp_tests.yml
Original file line number Diff line number Diff line change
Expand Up @@ -62,9 +62,11 @@ jobs:
cp ./.sepp/main.config sepp-package/sepp/.sepp/main.config
cd functional_tests
rm -v `find ~/ -type f -name pplacer`
rm -v `find ~/ -type f -name guppy`
wget "https://github.com/matsen/pplacer/releases/download/v1.1.alpha17/pplacer-Linux-v1.1.alpha17.zip"
unzip pplacer-Linux-v1.1.alpha17.zip
mv -v pplacer-Linux-v1.1.alpha17/pplacer ../.sepp/bundled-v4.5.5/pplacer
mv -v pplacer-Linux-v1.1.alpha17/guppy ../.sepp/bundled-v4.5.5/guppy
rm -rf pplacer-Linux-v1.1.alpha17*
../sepp-package/run-sepp.sh ../test/unittest/data/q2-fragment-insertion/input_fragments.fasta funcTest -x 2 -a ../test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta -t ../test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk -r ../test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info -b 1
cat ../test/functionaltest/funcTest_q2-tiny_placement.tog.relabelled.tre | sed "s/((163164:0.0792419/((163164:0.079242/" | sed "s/1024637:0.0283109)'nodeid_321248':0.0224664/1024637:0.0283109)'nodeid_321248':0.0224708/" | sed "s/testseqe:0.0964783):0.195875)'nodeid_320633':0.0493007/testseqe:0.096466):0.195871)'nodeid_320633':0.0493007/" | sed "s/(272555:0.0600304/(272555:0.0600251/" | sed "s/testseqg:0.0321409):0.0609292)'nodeid_335817':0.281379)'nodeid_335169':0.00443657/testseqg:0.032141):0.0609345)'nodeid_335817':0.281379)'nodeid_335169':0.00443657/" > funcTest_q2-tiny_placement.tog.relabelled.tre
Expand Down

0 comments on commit 96d7438

Please sign in to comment.