Updated to MzLib 1.0.541 and updated one unit test (#2304)

smith-chem-wisc · Sep 7, 2023 · 20713d6 · 20713d6
1 parent dedbef8
commit 20713d6
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Showing 7 changed files with 10 additions and 9 deletions.
diff --git a/MetaMorpheus/CMD/CMD.csproj b/MetaMorpheus/CMD/CMD.csproj
@@ -24,7 +24,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="2.0.0" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="2.0.0" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.539" />
+    <PackageReference Include="mzLib" Version="1.0.541" />
     <PackageReference Include="Nett" Version="0.15.0" />
   </ItemGroup>
 

diff --git a/MetaMorpheus/EngineLayer/EngineLayer.csproj b/MetaMorpheus/EngineLayer/EngineLayer.csproj
@@ -21,7 +21,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="2.0.0" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="2.0.0" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.539" />
+    <PackageReference Include="mzLib" Version="1.0.541" />
     <PackageReference Include="NETStandard.Library" Version="2.0.3" />
     <PackageReference Include="Nett" Version="0.15.0" />
     <PackageReference Include="Newtonsoft.Json" Version="13.0.1" />

diff --git a/MetaMorpheus/GUI/GUI.csproj b/MetaMorpheus/GUI/GUI.csproj
@@ -55,7 +55,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="2.0.0" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="2.0.0" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.539" />
+    <PackageReference Include="mzLib" Version="1.0.541" />
     <PackageReference Include="Nett" Version="0.15.0" />
     <PackageReference Include="Newtonsoft.Json" Version="13.0.1" />
     <PackageReference Include="OxyPlot.Core" Version="2.0.0" />

diff --git a/MetaMorpheus/GuiFunctions/GuiFunctions.csproj b/MetaMorpheus/GuiFunctions/GuiFunctions.csproj
@@ -14,7 +14,7 @@
 
   <ItemGroup>
     <PackageReference Include="itext7" Version="7.1.13" />
-    <PackageReference Include="mzLib" Version="1.0.539" />
+    <PackageReference Include="mzLib" Version="1.0.541" />
     <PackageReference Include="OxyPlot.Wpf" Version="2.0.0" />
     <PackageReference Include="Svg" Version="3.4.3" />
   </ItemGroup>

diff --git a/MetaMorpheus/TaskLayer/TaskLayer.csproj b/MetaMorpheus/TaskLayer/TaskLayer.csproj
@@ -21,7 +21,7 @@
     <PackageReference Include="Microsoft.ML.CpuMath" Version="2.0.0" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="2.0.0" />
     <PackageReference Include="Microsoft.NETCore.App" Version="2.2.8" />
-    <PackageReference Include="mzLib" Version="1.0.539" />
+    <PackageReference Include="mzLib" Version="1.0.541" />
     <PackageReference Include="NetSerializer" Version="4.1.1" />
     <PackageReference Include="Nett" Version="0.15.0" />
   </ItemGroup>

diff --git a/MetaMorpheus/Test/GuiFunctionsTest.cs b/MetaMorpheus/Test/GuiFunctionsTest.cs
@@ -31,11 +31,13 @@ public static void TestGetUniprotFilename(string proteomeID, bool reviewed, bool
             Assert.AreEqual(expectedResult, filename);
         }
 
+        // Occasionally the downloaded files will change, and thus the expected result will need to be updated.
+        // To verify, download the database and count the number of entries.
+        // The expected result will be double the number of entries, due to decoys - 9/1/23 NB
         [Test]
-        [Parallelizable(ParallelScope.All)]
         [TestCase("UP000000280", true, true, true, true, "1.fasta.gz", 50)]
         [TestCase("UP000000280", true, true, true, false, "2.fasta", 50)]
-        [TestCase("UP000000280", true, true, false, true, "3.fasta.gz", 40)]
+        [TestCase("UP000000280", true, true, false, true, "3.fasta.gz", 50)]
         [TestCase("UP000000280", true, false, true, true, "4.xml.gz", 50)]
         [TestCase("UP000000280", false, true, true, true, "5.fasta.gz", 2)]
         [TestCase("UP000000280", true, true, false, false, "6.fasta", 50)]
@@ -85,7 +87,6 @@ public static async Task UniprotHtmlQueryTest(string proteomeID, bool reviewed,
 
 
             Assert.That(reader.Count == listCount);
-
         }
     }
 }
diff --git a/MetaMorpheus/Test/Test.csproj b/MetaMorpheus/Test/Test.csproj
@@ -23,7 +23,7 @@
     <PackageReference Include="Microsoft.ML" Version="2.0.0" />
     <PackageReference Include="Microsoft.ML.CpuMath" Version="2.0.0" />
     <PackageReference Include="Microsoft.ML.FastTree" Version="2.0.0" />
-    <PackageReference Include="mzLib" Version="1.0.539" />
+    <PackageReference Include="mzLib" Version="1.0.541" />
     <PackageReference Include="NUnit" Version="3.13.3" />
     <PackageReference Include="NUnit3TestAdapter" Version="4.2.1" />
     <PackageReference Include="Microsoft.NET.Test.Sdk" Version="17.1.0" />