#3 -Spectral Match Generalization

[nbollis]

Generalized the PeptideSpectralMatch class to a generic SpectralMatch class. This enables OligoSpectralMatch to use all of the same Writing classes and a vast majority of the FDR calculations.
Also added some tests to the Bin class for test coverage

[codecov]

Codecov Report

Attention: Patch coverage is 92.72503% with 59 lines in your changes are missing coverage. Please review.

Project coverage is 92.67%. Comparing base (8ab02bc) to head (11c8e82).

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #2340      +/-   ##
==========================================
+ Coverage   92.65%   92.67%   +0.02%     
==========================================
  Files         136      137       +1     
  Lines       21243    21259      +16     
  Branches     2930     2939       +9     
==========================================
+ Hits        19682    19702      +20     
+ Misses       1083     1077       -6     
- Partials      478      480       +2     

Files	Coverage Δ
...ineLayer/Calibration/DataPointAquisitionResults.cs	80.43% <100.00%> (ø)
...rpheus/EngineLayer/Calibration/LabeledDataPoint.cs	100.00% <100.00%> (ø)
...s/EngineLayer/ClassicSearch/ClassicSearchEngine.cs	97.84% <100.00%> (ø)
...gineLayer/CrosslinkSearch/CrosslinkSearchEngine.cs	91.08% <100.00%> (ø)
...EngineLayer/CrosslinkSearch/CrosslinkedPeptides.cs	100.00% <100.00%> (ø)
...aMorpheus/EngineLayer/GlycoSearch/GlycoPeptides.cs	88.03% <100.00%> (ø)
...pheus/EngineLayer/GlycoSearch/GlycoSearchEngine.cs	92.67% <100.00%> (ø)
MetaMorpheus/EngineLayer/Gptmd/GptmdEngine.cs	89.34% <100.00%> (ø)
...eus/EngineLayer/Localization/LocalizationEngine.cs	98.36% <100.00%> (ø)
...eus/EngineLayer/ModernSearch/ModernSearchEngine.cs	74.54% <100.00%> (ø)
... and 35 more

[trishorts]

wonder about switching from psm to sm for all things. would be a big change.