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Including a Machine learning project for ML/DL and the Chronologer Model #745

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elaboy
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@elaboy elaboy commented Nov 30, 2023

This PR includes:

- Machine Learning project for machine learning/deep learning modules. This project could hold all machine learning related classes

- Abstract classes for TorchSharp models and datasets

- An implementation of these abstract classes with Chronologer as an example

MICHAEL SHORTREED and others added 30 commits November 18, 2021 12:30
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codecov bot commented Nov 30, 2023

Codecov Report

Merging #745 (5af0151) into master (353ae25) will decrease coverage by 3.43%.
The diff coverage is 87.08%.

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #745      +/-   ##
==========================================
- Coverage   74.69%   71.26%   -3.43%     
==========================================
  Files         173      182       +9     
  Lines       29209    30092     +883     
  Branches     2899     2993      +94     
==========================================
- Hits        21817    21446     -371     
- Misses       6903     8157    +1254     
  Partials      489      489              
Files Coverage Δ
mzLib/MachineLearning/TorchDataset.cs 100.00% <100.00%> (ø)
mzLib/MassSpectrometry/MsDataScan.cs 83.75% <100.00%> (-0.21%) ⬇️
mzLib/Omics/Fragmentation/MatchedFragmentIon.cs 97.61% <100.00%> (ø)
...mics/Fragmentation/TerminusSpecificProductTypes.cs 100.00% <ø> (ø)
...eomics/Fragmentation/DissociationTypeCollection.cs 99.19% <ø> (ø)
mzLib/Proteomics/Protein/Protein.cs 97.01% <ø> (ø)
...Proteomics/ProteolyticDigestion/DigestionParams.cs 88.73% <ø> (ø)
...roteolyticDigestion/PeptideWithSetModifications.cs 96.27% <ø> (ø)
...teomics/ProteolyticDigestion/ProductTypeMethods.cs 0.00% <ø> (ø)
...roteomics/ProteolyticDigestion/ProteinDigestion.cs 95.18% <ø> (ø)
... and 15 more

... and 2 files with indirect coverage changes

@elaboy elaboy marked this pull request as ready for review November 30, 2023 16:45
@elaboy elaboy added the WIP label Nov 30, 2023
@elaboy elaboy closed this Dec 4, 2023
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3 participants