fix: fixed read filter.py for read_length=0 (#50)

snakemake-workflows · Jul 11, 2024 · 992346b · 992346b
1 parent 966e059
commit 992346b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/scripts/read_filter.py b/workflow/scripts/read_filter.py
@@ -21,8 +21,8 @@ def is_zipped(fname):
 
 if snakemake.config["min_length"] <= 0:
     if is_zipped(snakemake.input[0]):
-        with gzip.open(snakemake.input[0], "wb") as f_in, open(
-            snakemake.output[0], "wb"
+        with gzip.open(snakemake.input[0], "rt") as f_in, open(
+            snakemake.output[0], "wt"
         ) as f_out:
             shutil.copyfileobj(f_in, f_out)
     else: