fix: taking absolute l2fc values to sort (#91)

snakemake-workflows · Sep 19, 2024 · 9c009d0 · 9c009d0
1 parent 822120c
commit 9c009d0
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/scripts/de_analysis.py b/workflow/scripts/de_analysis.py
@@ -108,7 +108,7 @@
 normalized = counts_df.T * sf
 
 # shorthand for log2fold and pvalue columns
-log2foldchange = stat_res.results_df["log2FoldChange"]
+log2foldchange = np.abs(stat_res.results_df["log2FoldChange"])
 # 'pvalue' is a pandas series, linear, of length(number of aligned loci)
 pvalue = stat_res.results_df["pvalue"]
 padj = stat_res.results_df["padj"]