fix: adapt to changes in snakemake-interface-executor-plugins

pyproject.toml

@@ -11,8 +11,8 @@ readme = "README.md"
 
 [tool.poetry.dependencies]
 python = "^3.9"
-snakemake-interface-common = "^1.3.2"
-snakemake-interface-executor-plugins = "^3.0.0"
+snakemake-interface-common = "^1.4.1"
+snakemake-interface-executor-plugins = "^4.0.0"
 snakemake-executor-plugin-slurm-jobstep = "^0.1.0"
 throttler = "^1.2.2"
 

snakemake_executor_plugin_slurm/__init__.py

@@ -18,7 +18,7 @@
 from snakemake_interface_executor_plugins.workflow import WorkflowExecutorInterface
 from snakemake_interface_executor_plugins.logging import LoggerExecutorInterface
 from snakemake_interface_executor_plugins.jobs import (
-    ExecutorJobInterface,
+    JobExecutorInterface,
 )
 from snakemake_interface_common.exceptions import WorkflowError
 from throttler import Throttler
@@ -74,7 +74,7 @@ def additional_general_args(self):
         # SLURM jobsteps.
         return "--slurm-jobstep --jobs 1"
 
-    def run_job(self, job: ExecutorJobInterface):
+    def run_job(self, job: JobExecutorInterface):
         # Implement here how to run a job.
         # You can access the job's resources, etc.
         # via the job object.
@@ -366,7 +366,7 @@ async def job_stati(self, command):
 
         return (res, query_duration)
 
-    def get_account_arg(self, job: ExecutorJobInterface):
+    def get_account_arg(self, job: JobExecutorInterface):
         """
         checks whether the desired account is valid,
         returns a default account, if applicable
@@ -393,7 +393,7 @@ def get_account_arg(self, job: ExecutorJobInterface):
                     )
             return self._fallback_account_arg
 
-    def get_partition_arg(self, job: ExecutorJobInterface):
+    def get_partition_arg(self, job: JobExecutorInterface):
         """
         checks whether the desired partition is valid,
         returns a default partition, if applicable