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feat: make it possible to set input as files or dirs to multiqc (#488)
* feat: make it possible to set input as files or dirs to multiqc make it possible to use the actual input from the rule as input to multiqc, instead of converting it to dirs that are then searched. * Update bio/multiqc/test/Snakefile Co-authored-by: Filipe G. Vieira <fgarrettvieira@gmail.com> * feat: change params variable name * Update Snakefile * doc: update documentation * Update bio/multiqc/meta.yaml Co-authored-by: Filipe G. Vieira <fgarrettvieira@gmail.com> Co-authored-by: Filipe G. Vieira <fgarrettvieira@gmail.com>
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Original file line number | Diff line number | Diff line change |
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@@ -1,9 +1,12 @@ | ||
name: multiqc | ||
description: | | ||
Generate qc report using multiqc. | ||
url: https://multiqc.info/ | ||
authors: | ||
- Julian de Ruiter | ||
input: | ||
- input directory containing qc files | ||
- input directory containing qc files, default behaviour is to extract folder path from the provided files or parent folder if a folder is provided. | ||
params: | ||
- use_input_files_only: if this variable is set to True input will be used as it is, i.e no folder will be extract from provided file names | ||
output: | ||
- qc report (html) |
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