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fix: bcftools filter cannot run with mem options and this will prevent mem-max to be set. #464

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Mar 9, 2022
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fix: bcftools filter cannot run with mem options and this will prevent mem-max to be set. #464

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2 changes: 1 addition & 1 deletion bio/bcftools/filter/wrapper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
from snakemake.shell import shell
from snakemake_wrapper_utils.bcftools import get_bcftools_opts

bcftools_opts = get_bcftools_opts(snakemake)
bcftools_opts = get_bcftools_opts(snakemake, parse_memory=False)
log = snakemake.log_fmt_shell(stdout=False, stderr=True)

if len(snakemake.output) > 1:
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