Fix FreeBSD on CirrusCI samtools issue

soedinglab · Jul 1, 2021 · 4f1996a · 4f1996a
1 parent a2e2129
commit 4f1996a
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Showing 2 changed files with 5 additions and 7 deletions.
diff --git a/.cirrus.yml b/.cirrus.yml
@@ -4,11 +4,9 @@ freebsd_instance:
 task:
   env:
     CIRRUS_CLONE_SUBMODULES: true
-  install_script: pkg install -y cmake git
-  script: |
-    mkdir build
-    cd build
+  install_script: pkg install -y cmake git samtools
+  compile_script: |
+    mkdir build && cd build
     cmake -DCMAKE_BUILD_TYPE=Release -DHAVE_TESTS=1 -DENABLE_WERROR=1 -DHAVE_SSE4_1=1 ..
     make -j $(sysctl -n hw.ncpu)
-    cd ..
-    ./util/regression/run_regression.sh ./build/src/mmseqs SCRATCH
+  test_script:  ./util/regression/run_regression.sh ./build/src/mmseqs SCRATCH
diff --git a/util/regression b/util/regression